Table 2 Examples of mobile DNA elements in Psa3 (ICMP18708) and Psa1 (ICMP9853).
name | size (bp) | copy no. Psa3 | copy no. Psa1 | Element type or IS family | closest example in GenBank (DNA match) |
|---|---|---|---|---|---|
Tn6212 | 16316 | 1 | 0 | XerC | Ps pv. syringae, (99%), Ps pv. tomato (99%) |
ISPsy35 | 1701 | 3 | 1 | IS110 | Ps pv. theae (99%), Ps pv. actinidifoliorum (99%), Ps pv. viburni (99%) |
ISPpu10-like | nd | 0 | 1 | IS110 | Â |
ISPsy36 | 1658 | 21 | 40 | IS1182 | P. avellanae, Ps pv. theae, Psa5 (all 100%) |
ISPsy40 | 2644 | 14 | 7 | IS21 | Ps pv. actinidifoliorum (99%) |
ISPsy41 | 2575 | 3 | 26 | IS21 | P. mandelii (91%), P. veronii (91%) |
ISPsy20 | 2572 | 0 | 1 | IS21 | Â |
ISPsy17 | 1374 | 11 | 0 | IS256 | Ps pv. maculicola (96% id) |
ISPsy31 | 1667 | 54 | 88 | IS3 | P. avellanae, Ps pv. theae (100%) |
ISPsy28 | 1292 | 19 | 11 | IS3 | P. avellanae, Ps pv. theae, P. amygdali pv. morsprunorum (99%) |
ISPsy37 | 1215 | 1 | 2 | IS3 | Psa5 (98%), P. amygdali pv. morsprunorum (96%) |
ISPsy24 | nd | 1 | 0 | IS3 | Â |
ISPsy38 | 1100 | 0 | 31 | IS30 | P. avellanae (99%), P. coronafaciens (99%) |
ISPsy33 | 1429 | 27 | 20 | IS4_ssgrIS4 | P. avellanae, Ps pv. theae, Ps pv. actinidifoliorum (all 99%) |
ISPsy19-like | nd | 1 | 1 | IS5 | Â |
ISPa67-like | nd | 1 | 1 | IS5 | Â |
ISPsy2 | 1200 | 1 | 1 | IS5_ssgr_IS5 | Ps pv. eriobotryae, P. savastanoi pv. phaseolicola (99%) |
ISPsy34 | 2041 | 11 | 24 | IS66 | Ps pv. avii, Ps pv. actinidifoliorum (96%) |
ISPsy43 (Tn6211) | 4875 | 1 | 0 | IS66 | P. amygdali pv. morsprunorum (99%), many P. syringae pathovars (99%) |
ISPsy32 | 1170 | 60 | 48 | IS630 | Psa2 (99%), P. broussonetiae (99%), Ps pv. actinidifoliorum (98%) |
ISPsy25 | nd | 1 | 1 | IS630 | Â |
ISPsy32-like | nd | 11 | 11 | IS630 | Â |
ISPsy200-like-A | 459 | 1 | 1 | IS200-like | Ps pv. theae (99%), P. amygdali pv. morsprunorum (99%) |
ISPsy200-like-B | 459 | 1 | 1 | IS200-like | Ps pv. theae, P. avellanae (99%) |
TnE622 | 3734 | 1 | 1 | Tn3 | P. savastonoi pv. glycinea B076 (99%) |
ISPsy39 | 3939 | 0 | 3 | Tn3 | P. amygdali pv. morsprunorum (99%) |
ISPsy42 | 5667 | 3 | 0 | Tn3 | Xanthomonas arboricola pv. pruni plasmid pXap41 (99%) |
MITEPsy3 | 102 | 78 | 0 | MITE | P. amygdali pv. lachrymans (87%) |
PSA_retron1 | 2566 | 1 | 0 | retron | Â |
PSA_retron2 | 2700 | 1 | 0 | retron | Â |
PSA_retron3 | 2102 | 0 | 1 | retron | Â |
Psa_I1 | 1867 | 15 | 0 | gp II intron | Psa5 (100%), P. avellanae (99%), |
Psa_I2 | 1873 | 13 | 19 | gp II intron | Ps pv. theae (99%), P. savastanoi pv. phaseolicola (99%), |
Psa_I3 | 1873 | 28 | 10 | gp II intron | P. avellanae, Ps pv. theae, Ps pv. actinidifoliorum, Psa5, Ps pv. tomato (all 99%) |
