Table 2 Distribution of sRNAs among different categories from six libraries.
Category | Total RNAs | Unique sRNAs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
CK1 | T1 | T2 | T3 | T4 | CK2 | CK1 | T1 | T2 | T3 | T4 | CK2 | |
Total | 12927907 (100.00%) | 12459104 (100.00%) | 12019783 (100.00%) | 19394365 (100.00%) | 18742399 (100.00%) | 15110298 (100.00%) | 261989 (100.00%) | 241618 (100.00%) | 176773 (100.00%) | 283491 (100.00%) | 271741 (100.00%) | 234452 (100.00%) |
Mapping to genome | 6901797 (53.39%) | 7334509 (58.87%) | 7417912 (61.71%) | 2972744 (15.33%) | 1752644 (9.35%) | 153637 (1.02%) | 99291 (37.90%) | 91890 (38.03%) | 65360 (36.97%) | 36837 (12.99%) | 24127 (8.88%) | 3377 (1.44%) |
rRNA | 2655686 (20.54%) | 1694394 (13.60%) | 2070793 (17.23%) | 3872395 (19.97%) | 5138616 (27.42%) | 5814161 (38.48%) | 35638 (13.60%) | 24230 (10.03%) | 27726 (15.68%) | 34652 (12.22%) | 28664 (10.55%) | 48093 (20.51%) |
snRNA | 74502 (0.58%) | 42547 (0.34%) | 39037 (0.32%) | 67099 (0.35%) | 94537 (0.50%) | 74156 (0.49%) | 1497 (0.57%) | 1250 (0.52%) | 1139 (0.64%) | 1435 (0.51%) | 1404 (0.52%) | 1476 (0.63%) |
snoRNA | 60660 (0.47%) | 46930 (0.38%) | 50385 (0.42%) | 51735 (0.27%) | 51114 (0.27%) | 77904 (0.52%) | 1507 (0.58%) | 1293 (0.54%) | 1367 (0.77%) | 835 (0.29%) | 600 (0.22%) | 885 (0.38%) |
tRNA | 1303429 (10.08%) | 593504 (4.76%) | 524645 (4.36%) | 1004784 (5.18%) | 903795 (4.82%) | 543269 (3.60%) | 7098 (2.71%) | 6518 (2.70%) | 4753 (2.69%) | 5118 (1.81%) | 3569 (1.31%) | 5470 (2.33%) |
Matching known miRNAs | 1101757 (8.52%) | 1543596 (12.39%) | 3194405 (26.58%) | 456281 (2.35%) | 163388 (0.87%) | 0(0.00%) | 2523 (0.96%) | 4040 (1.67%) | 4266 (2.41%) | 1320 (0.47%) | 632 (0.23%) | 0(0.00%) |
Unannotated sRNAs | 7731873 (59.81%) | 8538133 (68.53%) | 6140518 (51.09%) | 13942071 (71.89%) | 12390949 (66.11%) | 8600808 (56.92%) | 213726 (81.58%) | 204287 (84.55%) | 137522 (77.80%) | 240131 (84.70%) | 236872 (87.17%) | 178528 (76.15%) |
