Table 3 Summary information on conserved miRNAs found in six libraries.
miRNA family | Members | Normalized MiR read | Ratio | Sequence of a miRNA who has the highest count in the whole family | length (nt) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
CK1 | T1 | T2 | T3 | T4 | CK2 | T4/CK1 | ||||
miR156 | 7 | 5720.73 | 17890.14 | 9590.57 | 10471.83 | 2236.52 | 0 | 0.39 | UUGACAGAAGAGAGUGAGCAC | 21 |
miR157 | 1 | 431.03 | 1146.59 | 1086.19 | 925.39 | 218.77 | 0 | 0.51 | UUGACAGAAGAUAGUGAGCAC | 21 |
miR159 | 17 | 11768.65 | 39493 | 53347.57 | 5715.15 | 1591.91 | 0.69 | 0.14 | UUUGGAUUGAAGGGAGCUCUA | 21 |
miR162 | 1 | 187.89 | 196.16 | 202.58 | 7.57 | 3.04 | 0 | 0.02 | UCGAUAAACCUCUGCAUCCAG | 21 |
miR164 | 1 | 182.13 | 1197.41 | 1405.64 | 97.59 | 32.17 | 0 | 0.18 | UGGAGAAGCAGGGCACGUGCA | 21 |
miR166 | 3 | 1567.61 | 4487.97 | 5471.58 | 1736.89 | 315.3 | 0.59 | 0.2 | UCGGACCAGGCUUCAUUCCCC | 21 |
miR167 | 1 | 1128.77 | 2491.2 | 3045.56 | 198.59 | 25.88 | 0 | 0.02 | UGAAGCUGCCAGCAUGAUCUG | 21 |
miR319 | 2 | 977.88 | 3066.39 | 2165.65 | 742.77 | 161.38 | 0 | 0.17 | UUGGACUGAAGGGAGCUCCUC | 21 |
miR395 | 1 | 155.19 | 67.37 | 131.39 | 15.72 | 9.28 | 0 | 0.06 | CUGAAGUGUUUGGGGGAACUC | 21 |
miR396 | 3 | 1801.89 | 2768.82 | 2987.61 | 426.62 | 169.27 | 0 | 0.09 | UUCCACAGCUUUCUUGAACUU | 21 |
miR398 | 1 | 1296.14 | 3922.91 | 1053.05 | 0 | 79.2 | 0 | 0.06 | GGUGCGACCUGAGAUCACAUG | 21 |
miR399 | 1 | 42.62 | 70.85 | 120.88 | 3.58 | 2.27 | 0 | 0.05 | UGCCAAAGGAGAGUUGCCCUG | 21 |
miR408 | 1 | 296.69 | 717.67 | 759.28 | 104.58 | 63.01 | 0 | 0.21 | ACAGGGACGAGGUAGAGCAUG | 21 |
miR477 | 1 | 53.8 | 130.03 | 93.91 | 21.05 | 14.39 | 0 | 0.27 | CUCUCCCUCAAGGGCUUCUC | 20 |
miR482 | 1 | 138.85 | 401.23 | 562 | 23.21 | 3.15 | 0 | 0.02 | UCUUUCCAAUUCCUCCCAUGCC | 22 |
miR1026 | 1 | 0 | 42.31 | 101.21 | 0 | 0 | 0 | Both 0 | UUGUGAAAUGACUUGAGAGGUG | 22 |
miR1511 | 32 | 65121.9 | 138635.14 | 142694.28 | 31493.51 | 7107.36 | 3.79 | 0.11 | AACCGGCUCUGAUACCAAUUG | 21 |
miR1861 | 1 | 0 | 0 | 0 | 0 | 379.49 | 0 | ≫1 | UCGAUCUUGUGAGCAGACUGU | 21 |
miR3437 | 1 | 369.28 | 516.09 | 308.37 | 146.84 | 10 | 0 | 0.03 | CCUGGACUUGUAUUUUUGUAC | 21 |
miR3522 | 1 | 0 | 0 | 0 | 416.65 | 0 | 0 | Both 0 | UAGACCAAUUGACAGCUCUGU | 21 |
miR3633 | 1 | 80.41 | 156.02 | 164.38 | 23.96 | 0 | 0 | ≫1 | UCCCUAUUCCACCUAUUCCCCA | 22 |
miR3708 | 1 | 0 | 0 | 0 | 126.04 | 0 | 0 | Both 0 | UCACAAAGAUGUCGUCGUAUA | 21 |
miR4380 | 1 | 0 | 142.79 | 0 | 0 | 0 | 0 | Both 0 | CGAUUGUUGAUCCGAAUGUUGAUC | 24 |
miR4398 | 1 | 0 | 0 | 0 | 122.13 | 0 | 0 | Both 0 | UCUCAGCGGAGGAGAAAGGAC | 21 |
miR4414 | 1 | 0 | 0 | 0 | 0 | 146.18 | 0 | ≫1 | UCGCAAGGAUGCGGAGCGUGA | 21 |
miR5213 | 1 | 441.55 | 882.59 | 677.5 | 273.22 | 32.33 | 0 | 0.07 | UGCGAGUGUCUUCACCUCUGAA | 22 |
miR5258 | 1 | 0 | 0 | 0 | 173.21 | 0 | 0 | Both 0 | UCAAGCUGACAAAGAAGACUG | 21 |
miR5260 | 1 | 0 | 0 | 0 | 828.3 | 0 | 65.36 | Both 0 | UUUGACUGUUGCUCAUGGCCU | 21 |
miR5289 | 2 | 296.23 | 352.18 | 440.48 | 311.57 | 0 | 0 | ≫1 | CGGAAAACUGAAAUUCGGCGG | 20 |
miR5290 | 3 | 1474.3 | 4791.19 | 6292.27 | 665.32 | 241.15 | 0 | 0.16 | UUGGAGAGAGAGUAGACAAUG | 21 |
miR5642 | 1 | 0 | 0 | 0 | 103.41 | 0 | 0 | Both 0 | UCUCGCAGCUUGUAGGUGCU | 20 |
miR5643 | 1 | 0 | 0 | 0 | 237.53 | 0 | 0 | Both 0 | UGGCUCUUUAAGAUCGGCUGG | 21 |
miR5656 | 1 | 0 | 0 | 0 | 501.42 | 0 | 0 | Both 0 | UCGAAGUGGAGAUUGUGUUUU | 21 |
miR5663 | 1 | 0 | 0 | 0 | 103.41 | 0 | 0 | Both 0 | UGAGAAAAUGCAACUCUUAGCG | 22 |
miR5813 | 1 | 29.45 | 75.5 | 156.75 | 34.69 | 6.45 | 0 | 0.22 | AAGACAGCAGGACGGUGGUCAUG | 23 |
miR6103 | 1 | 0 | 0 | 0 | 129.29 | 0 | 0 | Both 0 | UUGUUCAGACAACCCUGGGAAC | 22 |
miR6437 | 1 | 0 | 0 | 0 | 219.39 | 0 | 0 | Both 0 | UCACGGACGGUAGGCUUGAAGC | 22 |
miR7708 | 1 | 46.72 | 104.35 | 26.33 | 32.36 | 17.99 | 0 | 0.39 | UGUAAUGACUGCACAAGACUGC | 22 |
miR7732 | 1 | 0 | 0 | 0 | 0 | 142.62 | 0 | ≫1 | UCGAGAUCUUGGAGGGGACCC | 21 |
miR7767 | 1 | 54.66 | 209.01 | 422.34 | 33.11 | 28.77 | 0 | 0.53 | CCAAGAUGAGUGCUCUCCU | 19 |
miR7782 | 23 | 32787.52 | 82247.59 | 103253.18 | 15917.77 | 2591.57 | 1.33 | 0.08 | ACCUAGCUCUGAUACCAUGUG | 21 |
miR7984 | 1 | 440.89 | 1007.59 | 1125.6 | 403.58 | 137.57 | 0 | 0.31 | UCCGACUUUGUGAAAUGACUU | 21 |
miR8122 | 1 | 0 | 0 | 0 | 0 | 151.44 | 0 | ≫1 | UUCCGACAAGACUUUUCUCUU | 21 |
miR8175 | 1 | 9.46 | 55.46 | 103.06 | 152.91 | 41.66 | 0 | 4.4 | UUCCCGGCAAUGGAACCA | 18 |
miR8183 | 1 | 0 | 0 | 0 | 314.07 | 10.72 | 27.96 | ≫1 | UUUCAGUUCGAAGGAUUGUG | 20 |
miR8581 | 1 | 148.91 | 116.26 | 0 | 0 | 0 | 0 | ≫1 | UGGAAAUUCUUGUAUGCACGACGU | 24 |
miR8666 | 1 | 0 | 0 | 0 | 338.19 | 0 | 0 | Both 0 | UUUGGUGAUAUAGACGUAAAU | 21 |
miR8781 | 1 | 114.76 | 0 | 0 | 0 | 0 | 0 | ≫1 | UUUGAUUGUGAAGUUUGACGGAGA | 24 |
miR9472 | 1 | 0 | 0 | 0 | 0 | 230.99 | 0 | ≫1 | UUCCAAUCUCUGAUACAAUG | 20 |
miR9653 | 1 | 0 | 131.73 | 206.76 | 0 | 0 | 0 | Both 0 | ACCAAGAUCUCUGAGGUCU | 19 |
miR9767 | 1 | 0 | 0 | 247.85 | 0 | 0 | 0 | Both 0 | UGAAAAGGACUUUGAAAAAAG | 21 |
Total: | 134 | 127165.91 | 307513.54 | 338243.82 | 73592.42 | 16201.83 | 99.72 | |||
