Table 3 BayeScan results for 32 outlier loci. Loci are sorted by alpha value showing those with annotation on the top. Distance = 0 indicates variants that occur within a gene

From: Landscape limits gene flow and drives population structure in Agassiz’s desert tortoise (Gopherus agassizii)

Scaffold

SNP position

loci ID

Gene Id

Annotation

Distance in bp

alpha

scaffold6464

54911

11119_0

00009179

Roundabout homolog 2

60263

1.92

scaffold12629

133684

2293_0

00012395

Cholesteryl ester transfer protein

0

1.73

scaffold22827

31344

5683_0

00018421

Histone H4

5606

1.65

scaffold13833

49357

2747_0

00017165

Thymosin beta-4

36710

1.58

scaffold2756

134627

15060_0

00010622

Protein of unknown function

60624

1.57

scaffold551

55350

15846_0

00017701

SCO-spondin

0

1.53

scaffold15252

24572

3264_0

00018750

Disintegrin and metalloproteinase domain-containing protein 9 (ADAM9)

0

1.53

scaffold2856

267921

7003_0

00010106

Cytoplasmic aconitate hydratase

0

1.52

scaffold19223

291661

4574_0

00009239

Zinc-binding alcohol dehydrogenase domain-containing protein 2

67214

1.50

scaffold2859

55437

15163_0

00012080

Centrosome-associated protein 350

0

1.45

scaffold63

3109

15920_0

00013645

Copine-4

10969

1.45

scaffold491

6232

15794_0

00014935

Protein of unknown function

23631

1.45

C51021930

80

392_0

Not annotated

Not annotated

N/A

2.07

scaffold19860

6644

4787_0

Not annotated

Not annotated

N/A

1.95

scaffold22858

22863

5691_0

Not annotated

Not annotated

N/A

1.93

C52703107

136

690_0

Not annotated

Not annotated

N/A

1.86

scaffold20680

7416

5039_0

Not annotated

Not annotated

N/A

1.86

scaffold11896

12432

1999_0

Not annotated

Not annotated

N/A

1.85

scaffold63199

2272

11018_0

Not annotated

Not annotated

N/A

1.72

scaffold10201

20884

1311_0

Not annotated

Not annotated

N/A

1.71

scaffold3734

10067

8445_0

Not annotated

Not annotated

N/A

1.60

scaffold11541

20785

1856_0

Not annotated

Not annotated

N/A

1.58

scaffold2439

63530

14768_0

Not annotated

Not annotated

N/A

1.57

scaffold8091

75743

12255_0

Not annotated

Not annotated

N/A

1.54

scaffold16925

10756

3814_0

Not annotated

Not annotated

N/A

1.51

scaffold24177

1816

6032_0

Not annotated

Not annotated

N/A

1.51

scaffold3201

8894

7644_0

Not annotated

Not annotated

N/A

1.47

scaffold22935

7321

5705_0

Not annotated

Not annotated

N/A

1.44

scaffold12752

138732

2334_0

Not annotated

Not annotated

N/A

1.42

scaffold7716

3799

12019_0

Not annotated

Not annotated

N/A

1.42

scaffold3736

47634

8451_0

Not annotated

Not annotated

N/A

1.40

scaffold2298

8101

5715_0

Not annotated

Not annotated

N/A

1.34

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