Figure 3 | Scientific Reports

Figure 3

From: Analysis of diet-induced differential methylation, expression, and interactions of lncRNA and protein-coding genes in mouse liver

Figure 3

Heatmap of DNA methylation in STD and HFD livers determined by 5meDIP-seq. (a) K-means clustering of 154664 methylated regions (y-axis) by peak signal (fragment counts) from −2000 bp to +2000 bp relative to midpoint (x-axis). (b) K-means clustering of 16026 CpG islands (y-axis) annotated in the UCSC genome browser by peak signal (fragment counts) from −2000 bp to +2000 bp relative to midpoint (x-axis). The color code in (a and b) reflects the number of fragments at the specified position. All heatmaps were generated using seqplots and a default cluster size of 5.

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