Table 1 RNA-seq alignment statistics.

From: Analysis of diet-induced differential methylation, expression, and interactions of lncRNA and protein-coding genes in mouse liver

Sample

Input read pairs

Uniquely mapped read pairs

Uniquely mapped read pairs (%)

HFD A

64811482

47999627

74.06%

HFD B

75925925

58699825

77.31%

HFD C

66170800

52564490

79.44%

STD A

62155721

47486909

76.40%

STD B

75900043

57932416

76.33%

STD C

55098436

41984291

76.20%

Average

66677068

51111260

76.62%

Average HFD (n = 3 pools)

68969402

53087981

76.94%

Average STD (n = 3 pools)

64384733

49134539

76.31%

  1. Three pools of 2 livers per diet (HFD A-C; STD A-C) were paired-end sequenced on the Illumina platform. Input read pairs passed Illumina’s internal quality control filters. Uniquely mapped read pairs are read pairs aligning to a unique site of the mouse genome with less than 2 mismatches.
Back to article page