Table 3 Pathway analysis.

From: Analysis of diet-induced differential methylation, expression, and interactions of lncRNA and protein-coding genes in mouse liver

Biological Process

GO-ID

FDR DAVID

FDR BiNGO/Cytoscape3.2

DEG DAVID

DEG BiNGO/Cytoscape3.2

Steroid biosynthetic process

6694

1.6E-13

6.2E-21

20

21

Cholesterol metabolic process

8203

1.0E-10

1.42E-22

17

22

Fatty acid metabolic process

6631

6.8E-04

3.1E-08

16

17

Lipid localization

10876

5.6E-03

1.3E-05

12

11

Circadian rhythm

7623

6.1E-02

8.01E-04

6

6

  1. DAVID and BiNGO/Cytoscape3.2 determined statistical overrepresentation of biological processes using the Benjamini-Hochberg method. Only DEG with average expression levels across all samples >1 CPM were considered for enrichment analysis. Biological processes are denoted by their official gene ontology names. GO-ID refers to the official Gene Ontology Identity Number. FDR DAVID and FDR BiNGO/Cytoscape3.2 refer to the False Discovery Rate-adjusted p-value calculated by DAVID and BiNGO/Cytoscape3.2, respectively. DEG DAVID and DEG BiNGO/Cytoscape3.2 refer to the number of DEG assigned by DAVID and BiNGO/Cytoscape3.2, respectively, to a biological process.
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