Figure 1
From: Genomic and molecular analysis of conserved and unique features of soybean PIF4
(A) Phylogenetic analysis and motif comparisons of three main PIF subfamilies in legumes. Protein sequences were aligned by Clustal W and trees constructed using the neighbor-joining method with 1000 bootstrap replicates in MEGA 7. Legume PIF protein sequences were used to predict the conserved motifs using the MEME Suite web server. Asterisks represent the GmPIF4 I and Gm PIF4 II clades. (B) Relationships of Glycine max PIFs. (Left) Genomic locations of PIFs and duplicated gene pairs in the Glycine max genome. (Right) Ka-Ks statistics of the duplicated gene pairs. (C) Relationships of Glycine max PIFs to Phaseolus vulgaris PIFs. (Left) Genomic locations of PIFs and duplicated gene pairs in the Glycine max and Phaseolus vulgais genome. (Right) Ka-Ks statistics of the related gene pairs. (B) and (C) generated using the Circa tool of omgenomics, http://omgenomics.com/.
