Figure 4

Heatmap of virulence factor calls from based on raw read mapping to VFDB for E. coli strains. Each row represents one E. coli strain, as indicated on the right of the heatmap. The strains are clustered based on their virulence factor profile, with the dendrogram displayed on the left. Each column represents one virulence factor, with selected general classes indicated below; a full list of virulence factors detected and their ordering in the heatmap can be found in Supplementary Table 1. Dark blue represents presence of a particular virulence factor in that strain; light blue indicates absence. Colored boxes on the right indicate empiric carbapenem, Pitt bacteremia score, and 30 day mortality associated with that strain.