Table 1 Population Branch Statistic (PBS) individual values and Cross-Population Extended Haplotype Homozygosity (XP-EHH) for all SNPs found under selection in Native Andean populations.
From: Selection scan reveals three new loci related to high altitude adaptation in Native Andeans
SNP | Alelle | Gene | Position | PBS | XPEHH | ||||
|---|---|---|---|---|---|---|---|---|---|
Ancestral | Derived | Andean vs. Mesoamerican | p-value | Andean vs. Amazonian | p-value | ||||
rs13411586 | C* | T | SP100 | 230988046 | 0.5846 | 2.3789 | 0.0037 | 2.1703 | 0.0065 |
rs9678342 | C* | T | SP100 | 230991955 | 0.5547 | 2.3193 | 0.0044 | 2.1356 | 0.0071 |
rs7582700 | T* | C | SP100 | 231024349 | 0.4644 | 2.2704 | 0.0050 | 2.1074 | 0.0076 |
rs7039618 | A | G* | TMEM38B | 107497627 | 0.3618 | 0.0842 | 0.3312 | 0.5672 | 0.1458 |
rs3817141 | T* | C | TMEM38B | 107507950 | 0.3906 | 0.0255 | 0.3099 | 0.6205 | 0.1351 |
rs10978213 | G* | A | TMEM38B | 107511706 | 0.3618 | 0.0235 | 0.3092 | 0.6171 | 0.1358 |
rs10816302 | A* | G | TMEM38B | 107526354 | 0.3835 | 0.0937 | 0.2697 | 0.6664 | 0.1264 |
rs10978240 | A | G* | TMEM38B | 107575093 | 0.3923 | 0.0764 | 0.2753 | 0.6307 | 0.1331 |
rs1046778 | T | C* | AS3MT | 104651474 | 0.3124 | 0.5023 | 0.5118 | 0.4008 | 0.4631 |
rs269866 | G* | A | DUOX2 | 43181698 | 0.6185 | 2.0599 | 0.0086 | 2.5865 | 0.0021 |
rs440191 | A | G* | CLC | 44913483 | 0.3039 | 1.6207 | 0.0234 | 0.3166 | 0.2046 |
