Table 1 Virus assembly from serum- and nasal-swab libraries using deep sequencing.
Virus | Family | GenBank acceession no. | Conting length (bp) | No. ofsequence reads | Coverage of total genome length (%) |
|---|---|---|---|---|---|
Porcine parvovirus 2 | Parvovirinae | MG345019 | 5,438 | 1,527 | 98.9 |
Porcine parvovirus 3 | Parvovirinae | MG345026 | 5,081 | 13,290 | 100.0 |
Porcine parvovirus 4 | Parvovirinae | MG345027 | 5,908 | 2,052 | 100.0 |
Porcine parvovirus 5 | Parvovirinae | MG345028 | 5,458 | 3,100 | 97.2 |
Porcine parvovirus 6 | Parvovirinae | MG345036 | 6,199 | 17,601 | 100.0 |
Porcine circovirus 2 | Circoviridae | MG717465 | 1,310 | 16 | 74.1 |
