Table 2 Suggestive SNPs detected for methane production with Bayesian Factor 10 < BF < 30, their position in base pairs, minor allele frequency (MAF) and percentage of total genetic variance explained by them.

BTA	SNP name	Position (bp)	MAF	BF	Allele sub. effect^a	Total genetic var. expl. (%)
1	ARSBFGLNGS94761	53656600	0.416	11.22	0.088	0.003
1	ARSBFGLNGS3821	61286751	0.337	15.37	0.177
1	BTB01665387	63061634	0.437	12.26	0.231
1	ARSBFGLNGS4572	67212088	0.381	28.01	0.179
2	Hapmap44041BTA23382	10617894	0.266	15.37	0.200	0.001
3	Hapmap33584BTA141202	30922247	0.128	10.19	0.235	0.075
3	Hapmap44183BTA105889	37602383	0.428	14.33	0.172
3	ARSBFGLNGS38388	43476846	0.421	11.22	0.170
3	ARSBFGLNGS98870	98587436	0.428	16.41	0.114
3	Hapmap39765BTA62582	99317016	0.266	13.29	0.225
4	BTA72259nors	20510260	0.360	17.45	0.172	0.001
8	Hapmap26798BTA82382	11398105	0.191	11.22	0.207	0.012
8	BTB00863195	23634451	0.449	10.19	0.088
8	ARSBFGLNGS39902	24288969	0.404	17.45	0.114
8	Hapmap52006BTA77999	29628947	0.449	15.37	0.133
8	BTB01356348	34847992	0.280	11.22	0.185
9	UAIFASA4057	50279445	0.245	16.41	0.197	0.005
9	BTB00392496	50899854	0.322	21.65	0.155
9	BTB01520203	62539556	0.383	22.70	0.166
9	Hapmap58377rs29014990	66292441	0.353	18.50	0.179
9	Hapmap42705BTA85041	99135245	0.196	16.41	0.191
10	BTA59410nors	17730891	0.215	12.26	0.194	0.002
11	ARSBFGLNGS27959	22465305	0.128	12.26	0.161	0.004
11	BTB01397452	33167082	0.428	21.65	0.156
11	BTB01641011	33771048	0.486	10.19	0.117
12	BTA31817nors	22219373	0.241	11.22	0.289	0.001
15	ARSBFGLNGS86665	67556240	0.227	16.41	0.196	0.003
18	ARSBFGLNGS14182	33602408	0.323	12.26	0.144	0.001
19	Hapmap48676BTA18047	47374363	0.490	13.29	0.094	0.003
20	ARSBFGLBAC36856	63407185	0.356	23.76	0.129	0.001
23	Hapmap61132rs29019650	11907305	0.402	10.19	0.158	0.001
24	ARSBFGLBAC31288	4273189	0.178	20.60	0.242	0.002
25	ARSBFGLNGS114786	7952738	0.400	10.19	0.141	0.002
28	BTB00987935	35294673	0.400	21.65	0.169	0.005

^aAllele substitution effects were estimated as \(\alpha =\sqrt{{\sigma }_{a}^{2}{(2pq)}^{-1}}\), where \({\sigma }_{a}^{2}\) is the genetic variance explained by the SNP, and p and q are the frequencies of the two alleles⁷⁶.

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