Table 1 Candidate reference genes and target genes description, primer sequences, and amplicon characteristics in this study.
Gene symbol | Gene description | Accession number | Primer sequence (5′-3′) | Size (bp) | PCR efficiency (%) | Regression Coefficient (R2) | Tm (°C) |
|---|---|---|---|---|---|---|---|
Reference genes | |||||||
18S rRNA | 18S ribosomal RNA | MH890464 | CCCCGACTGTTCCTGTTAAT | 59 | 105.5 | 0.995 | 77.5 |
TGCGTTTCTATTTTGTTGGTTT | |||||||
ACT | actin | MH890466 | GTGTTATGGTTGGGATGGG | 108 | 100.2 | 0.996 | 80 |
TGCTGACTATGCCGTGTTC | |||||||
ACT97 | actin 97 | MH890465 | CGGGCAGGTCATCACTATCGG | 200 | 97.7 | 0.997 | 86.9 |
CGGCAATCCCAGGAAACATCG | |||||||
HIS2B | Histone H2B | MH890468 | GGAAGAAATTGCCAAAGGATG | 106 | 89.1 | 0.996 | 81.8 |
TGCTTGAGGACCTTGAAGATGTA | |||||||
HIS4 | histone H4 | MH890467 | GGGACAACATCCAGGGAATC | 160 | 99.7 | 0.995 | 87 |
GCGTGCTCGGTGTAGGTGA | |||||||
TUA | alpha-tubulin | MH890463 | CATTTCCTCTTTGACTGCCTCC | 185 | 102.8 | 0.992 | 84 |
ATGCGGTGTTGGTGATTTCG | |||||||
TUB | beta-tubulin | MH890469 | AAATGAGCACCAAGGAGGTG | 119 | 100.6 | 0.991 | 82.6 |
GGTTGGAGGAATATCGCAGA | |||||||
UBA52 | ubiquitin-60S ribosomal protein L40 | MH890471 | GGCCAGGAAATACAACCAAG | 120 | 90.4 | 0.995 | 84 |
TTCTTCGGCCTCAACTGATT | |||||||
UBA80 | ubiquitin extension protein | MH890472 | GACCTACACCAAGCCGAAGA | 114 | 105.9 | 0.992 | 83.9 |
CACTCCTTCCTCAGCCTCTG | |||||||
UBC | ubiquitin conjugating enzyme S | MH890470 | AGTGGGTGGTGCTGTAGTCC | 121 | 102.5 | 0.992 | 82.7 |
AACTCCCGTTTCGTTTGTTG | |||||||
UBC E2 | ubiquitin-conjugating enzyme E2 | MH890473 | CAGTGGAGCCCTGCCCTTACC | 110 | 106.4 | 0.995 | 82 |
GCGATCTCTGGCACCAACGGG | |||||||
Target genes | |||||||
MK | mevalonate kinase | MH890474 | GCCGATGAATCACAGAAA | 181 | 105.3 | 0.993 | 82.5 |
GCAACGGTGGTGGTAGTA | |||||||
PAL | phenylalanine ammonia-lyase | MH890475 | CGGTTTGCCGTCGAATCTGT | 74 | 107.6 | 0.99 | 82.5 |
TCGCTATCTCCGCCCCCTTA | |||||||
4CL | 4-coumarate-CoA ligase | MH890476 | CGGTGCCTCTGAATCTGCT | 143 | 106.4 | 0.997 | 85.5 |
GATGTGGTGCTCTGCGTGC | |||||||