Table 1 Characteristic features of the analyzed pentapeptide categories.
From: Global pentapeptide statistics are far away from expected distributions
Pentapeptide category | abcde | a2bcd | a2b2c | a3bc | a3b2 | a4b | a5 | Total |
|---|---|---|---|---|---|---|---|---|
# different residues | 5 | 4 | 3 | 3 | 2 | 2 | 1 | |
# permutation classes, g | 15504 | 19380 | 3420 | 3420 | 380 | 380 | 20 | 42504 |
# sequences in each class, m | 120 | 60 | 30 | 20 | 10 | 5 | 1 | |
# sequences in category, g*m | 1860480 | 1162800 | 102600 | 68400 | 3800 | 1900 | 20 | 3200000 |
SQ | ||||||||
# peptides | 11826966639 | 10678009933 | 1474713851 | 1250343041 | 137441351 | 118960963 | 16794874 | 25145695663 |
DM | ||||||||
# peptides | 8403194988 | 7331367618 | 946224643 | 761468629 | 66880015 | 48819824 | 2475299 | 17560431016 |
% peptides | 71.1 | 68.7 | 64.2 | 60.9 | 48.7 | 41.0 | 14.7 | 69.8 |
avr. count of peptides per sequence | 4517 | 6305 | 9222 | 11133 | 17600 | 25695 | 123765 | 5488 |
α = 0.05 | ||||||||
# outlier peptides | 493138899 | 424035844 | 53363368 | 42424412 | 4159480 | 7698699 | 1024820702 | |
% outlier peptides | 5.9 | 5.8 | 5.6 | 5.6 | 6.2 | 15.8 | 5.8 | |
# sequences with high-abundance outliers | 53101 | 39865 | 4056 | 2897 | 203 | 248 | 100370 | |
# sequences with low-abundance outliers | 0 | 1 | 4 | 12 | 8 | 114 | 139 | |
# sequences with outliers | 53101 | 39866 | 4060 | 2909 | 211 | 362 | 100509 | |
% sequences with outliers | 2.9 | 3.4 | 4.0 | 4.3 | 5.6 | 19.1 | 3.1 | |
# classes with no outliers | 1268 | 4079 | 1298 | 1622 | 229 | 204 | 20 | 8720 |
% classes with no outliers | 8.2 | 21.0 | 38.0 | 47.4 | 60.3 | 53.7 | 20.5 | |
α = 0.001 | ||||||||
# outlier peptides | 280213162 | 220140554 | 26341865 | 15042352 | 1528111 | 5171988 | 548438032 | |
# sequences with outliers | 23395 | 15522 | 1445 | 814 | 60 | 159 | 41395 | |
# classes with no outliers | 4442 | 9749 | 2314 | 2714 | 322 | 276 | 20 | 19837 |
ND | ||||||||
# peptides | 1945203546 | 1941405338 | 318589904 | 302524159 | 46571312 | 47671781 | 9690386 | 4611656426 |
% peptides | 16.4 | 18.2 | 21.6 | 24.2 | 33.9 | 40.1 | 57.7 | 18.1 |
avr. count of peptides per sequence | 1046 | 1670 | 3105 | 4423 | 12256 | 25090 | 484519 | 1441 |
α = 0.05 | ||||||||
# outlier peptides | 65287845 | 60332804 | 11852693 | 10445205 | 7080780 | 8322425 | 163321752 | |
% outlier peptides | 3.4 | 3.1 | 3.7 | 3.5 | 15.2 | 17.5 | 3.5 | |
# sequences with high-abundance outliers | 45401 | 31854 | 3205 | 2331 | 255 | 257 | 83303 | |
# sequences with low-abundance outliers | 0 | 6 | 9 | 19 | 20 | 84 | 138 | |
# sequences with outliers | 45401 | 31860 | 3214 | 2350 | 275 | 341 | 83441 | |
% sequences with outliers | 2.4 | 2.7 | 3.1 | 3.4 | 7.2 | 17.9 | 2.6 | |
# classes with no outliers | 2400 | 6238 | 1673 | 1956 | 183 | 215 | 20 | 12685 |
% classes with no outliers | 15.5 | 32.2 | 48.9 | 57.2 | 48.2 | 56.6 | 29.8 | |
α = 0.001 | ||||||||
# outlier peptides | 29230408 | 23141426 | 3649728 | 2180996 | 4410942 | 4902831 | 67516331 | |
# sequences with outliers | 17112 | 10753 | 884 | 535 | 109 | 164 | 29557 | |
# classes with no outliers | 6940 | 12430 | 2713 | 2951 | 276 | 273 | 20 | 25603 |
NN | ||||||||
# peptides | 1309190957 | 1254681724 | 190474037 | 170300897 | 22748621 | 21599223 | 4612762 | 2973608221 |
% peptides | 11.1 | 11.8 | 12.9 | 13.6 | 16.6 | 18.2 | 27.5 | 11.7 |
avr. count of peptides per sequence | 704 | 1079 | 1856 | 2490 | 5986 | 11368 | 230638 | 929 |
α = 0.05 | ||||||||
# outlier peptides | 27845910 | 27168059 | 5035864 | 4734407 | 3100618 | 4456107 | 72340965 | |
% outlier peptides | 2.1 | 2.2 | 2.6 | 2.8 | 13.6 | 20.6 | 2.4 | |
# sequences with high-abundance outliers | 28667 | 21968 | 2487 | 1822 | 304 | 284 | 55532 | |
# sequences with low-abundance outliers | 1 | 10 | 10 | 18 | 12 | 93 | 144 | |
# sequences with outliers | 28668 | 21978 | 2497 | 1840 | 316 | 377 | 55676 | |
% sequences with outliers | 1.5 | 1.9 | 2.4 | 2.7 | 8.3 | 19.8 | 1.7 | |
# classes with no outliers | 4067 | 8309 | 1902 | 2153 | 146 | 202 | 20 | 16799 |
% classes with no outliers | 26.2 | 42.9 | 55.6 | 63.0 | 38.4 | 53.2 | 39.5 | |
α = 0.001 | ||||||||
# outlier peptides | 10275506 | 8847995 | 1465607 | 683925 | 2104751 | 2921002 | 26298786 | |
# sequences with outliers | 10017 | 6975 | 665 | 355 | 156 | 192 | 18360 | |
# classes with no outliers | 9279 | 14491 | 2856 | 3105 | 229 | 259 | 20 | 30239 |