Table 1 Alignment of Type IV secretion system in Hp_TH2099.

From: Evaluating the origin and virulence of a Helicobacter pylori cagA-positive strain isolated from a non-human primate

gene ID

presence (1) or absence (0) in TH2099_contigs

% identity

% aligned length

HP0519

1

92.16

102.89

HP0520

0

88.46

7.47

HP0522

1

95.09

100

HP0523

1

92.16

100

HP0524

1

95.55

100

HP0525

1

97.68

100

HP0526

1

98.67

100

HP0527

0

96.88

28.86

HP0528

1

97.64

100

HP0529

1

97.01

100

HP0530

1

97.36

100

HP0531

0

76.36

8.37

HP0532

1

98.56

57.77

HP0533

1

95.56

100

HP0534

0

97.51

34.01

HP0535

0

100

4.46

HP0536

0

90.48

6.09

HP0537

0

82.86

3.09

HP0538

1

97.72

100

HP0539

1

95.18

95.94

HP0540

1

95.81

100

HP0541

1

96.59

100

HP0542

1

97.67

100

HP0543

1

96.41

100

HP0544

1

97.96

91.43

HP0545

1

96.15

100

HP0546

1

94.25

100

HP0547

1

92.14

100.08

HP0549

1

95.7

100

  1. The cagPAI gene sequences of Hp_TH2099 were extracted from whole genome sequencing data and were aligned with cagPAI genes of 26695 strain by BLAST software. A BLAST matches with greater than 70% identity and greater than 50% of the locus length were indicated as “Presence”.
Back to article page