Figure 2
From: Artificially designed hybrids facilitate efficient generation of high-resolution linkage maps
Overview of the SELDLA analysis flow. (A) Sequence data are mapped to a reference sequence obtained by combining parental genomes, and SNPs in specific regions are extracted. (B) To analyze the genome of a parent, we focus only on the reference sequence of that parent, determine which of its two chromosomes was passed to the hybrid, and phase. This is repeated from the beginning of the scaffold. (C) We arrange scaffolds with similar phase patterns on the chromosome. If phase patterns are different at the beginning and end of the scaffold, it is also possible to determine the orientation on the chromosome.
