Table 1 Summary of tRF-5 series with a relative cloning frequency >0.02‰ (reads per mil) in arsenite-treated samples.

From: A tRNA-derived RNA Fragment Plays an Important Role in the Mechanism of Arsenite -induced Cellular Responses

Sequence

Origin

Relative sequencing frequency (‰ of total sequencing reads)

Untreated

Arsenite

GGGGGTATAGCTCAGCGGTAGAGCGCGTGCT

AlaTGC

0.13

0.46

GGGGATGTAGCTCAGTGGTAGAGCGCGCTTC

AlaCGC

1.31

7.01

GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT

AlaAGC

1.00

5.25

GGCTCTGGCGCAATGGATAGCGCATTGGACT

ArgAGA

0.10

11.66

GGGCCAGTGGCGCAATGGATAACGCGTCTGA

ArgACG

0.08

0.83

GACCGCGTGGCCTAATGGATAAGGCGTCTGA

ArgCGG

0.04

6.86

GGCTCCGTGGCGCAATGGATAGCGCATTGGA

ArgTCT

0.28

13.46

GGTCCCATGGTGTAATGGTTAGCACTCTGGA

GlnCAA

0.02

1.59

GGTTCCATGGTGTAATGGTTAGCACTCTGGA

GlnCAG

0.07

49.50

GGTTCCATGGTGTAATGGTAAGCACTCTGGA

GlnCTG

0.06

2.84

GGCCCCATGGTGTAATGGTTAGCACTCTGGA

GlnTTG

0.01

0.72

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT

GluCTC-S

0.01

52.90

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCAATAATTCTCGGCTGC

GluCTC-L

0.00

33.90

GCATGTGGTTCAGTGGTAGAATTCTCGCCTA

GlyGCC

11.31

23.64

GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG

LeuAAG

1.322

2.95

AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC

MetCAT-1

6.494

79.38

AGCAGTGGCGCAGCGGAAGCGTGCTGGGCCC

MetCAT-2

0.13

0.83

GGCTCGTTGGTCTAGGGGTATGATTCTCGCT

ProTGG

2.01

9.01

GGCTTGGTCTAGGGGTATGATTCTCGCTTCA

ProCGG

0.07

8.96

GCTGTGATGGCCGAGTGGTTAAGGCATTGGA

SerCGA

0.03

0.06

GGCCTCGTGGCGCAACGGTAGCGCGTCTGAC

TrpTGG

0.08

1.28

GACCTCGTGGCGCAACGGTAGCGCGTCTGAC

TrpCCA

0.03

4.42

GGCTCCATAGCTCAGGGGTTAGAGCACTGGT

ThrTGT

0.23

1.28

  1. The relative cloning frequency of a tRF was calculated by dividing its read number by the total read number of each experimental group. tRFs were sorted by an alphabetical order of parental tRNA isoforms. For tRNA isoforms sharing the same anticodon, they were sequentially numbered according to the abundance of tRF-5s in the arsenite-treated sample.
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