Figure 4
From: Rotational direction of flagellar motor from the conformation of FliG middle domain in marine Vibrio
(A) The root mean square deviation (RMSD) distributions of the wild-type (WT) and mutant FliGMC1 conformations during the simulations compared with the crystal structure of the reference. The horizontal axis shows the RMSD, and the vertical axis shows density of RMSD values. (B) Projections of the conformations of each FliGMC1 protein in the molecular dynamics trajectories upon the PC1 (horizontal) and PC2 (vertical) axes. For each protein, 3,000 conformations were plotted. The densities of conformation on the plane were estimated by the Gaussian kernel density estimation.
