Table 1 Viral detection using total RNA extraction and the Nanopore MinION sequencing technology.
From: Nanopore-based detection and characterization of yam viruses
Taxonomic assignment (DIAMOND) | Number of reads | Percentage of total viral reads | Minimum read length (bp) | Maximum read length (bp) | Average read length (bp) |
|---|---|---|---|---|---|
Badnavirus | 156 | 0.4 | 354 | 3112 | 1420 |
Begomovirus | 2 | 5.10−3 | 330 | 1560 | 945 |
Bymovirus | 5 | 1.10−2 | 331 | 2460 | 1510 |
Macluravirus | 19252 | 46.4 | 236 | 14211 | 1104 |
Pestivirus | 17 | 4.10−2 | 356 | 1071 | 613 |
Potyvirus | 22055 | 53.2 | 227 | 8876 | 1163 |
