Table 1 Demographic characteristics of TCGA samples.

From: Low mutation and neoantigen burden and fewer effector tumor infiltrating lymphocytes correlate with breast cancer metastasization to lymph nodes

 

LN-negative

LN-postive

p

N

128

115

 

Race (%)

  

0.355

   NA

3 (2.3)

0 (0.0)

 

   American Indian or Alaska native

0 (0.0)

1 (0.9)

 

   Asian

6 (4.7)

5 (4.3)

 

   Black or African American

23 (18.0)

17 (14.8)

 

   White

96 (75.0)

92 (80.0)

 

Number of positive lymphnodes by HE (mean (sd))

0.00 (0.00)

7.13 (5.71)

<0.001

Progesterone receptor status (%)

  

0.035

   NA

9 (7.0)

10 (8.7)

 

   Indeterminate

0 (0.0)

1 (0.9)

 

   Negative

54 (42.2)

29 (25.2)

 

   Positive

65 (50.8)

75 (65.2)

 

Estrogen receptor status (%)

  

0.01

   NA

8 (6.2)

10 (8.7)

 

   Indeterminate

0 (0.0)

1 (0.9)

 

   Negative

46 (35.9)

20 (17.4)

 

   Positive

74 (57.8)

84 (73.0)

 

HER2 immunohistochemistry receptor status (%)

  

0.026

   NA

15 (11.7)

26 (22.6)

 

   Equivocal

28 (21.9)

12 (10.4)

 

   Indeterminate

0 (0.0)

1 (0.9)

 

   Negative

69 (53.9)

57 (49.6)

 

   Positive

16 (12.5)

19 (16.5)

 

Therapy types (%)

  

0.019

   NA

36 (28.1)

24 (20.9)

 

   Ancillary

1 (0.8)

1 (0.9)

 

   Chemotherapy

55 (43.0)

73 (63.5)

 

   Chemotherapy and hormone therapy

0 (0.0)

1 (0.9)

 

   Hormone therapy

34 (26.6)

12 (10.4)

 

   Immunotherapy

1 (0.8)

1 (0.9)

 

   Targeted molecular therapy

0 (0.0)

1 (0.9)

 

   Other

1 (0.8)

2 (1.7)

 

Pathologic stage (%)

  

<0.001

   Stage II

3 (2.4)

1 (0.9)

 

   Stage IIA

106 (82.8)

8 (7.0)

 

   Stage IIB

15 (11.7)

26 (22.6)

 

   Stage III

0 (0.0)

2 (1.7)

 

   Stage IIIA

0 (0.0)

53 (46.1)

 

   Stage IIIB

4 (3.1)

3 (2.6)

 

   Stage IIIC

0 (0.0)

22 (19.1)

 

Age at initial pathologic diagnosis (mean (sd))

54.87 (9.19)

52.43 (9.08)

0.039

Vital status follow up (%)

  

0.142

   NA

2 (1.7)

3 (2.8)

 

   Alive

111 (91.7)

89 (83.2)

 

   Dead

8 (6.6)

15 (14.0)

 

   OS time (mean (sd))

1108.70 (1069.91)

1416.06 (1426.87)

0.091