Figure 6 | Scientific Reports

Figure 6

From: Molecular Characterization of Carbapenem Resistant Klebsiella pneumoniae and Klebsiella quasipneumoniae Isolated from Lebanon

Figure 6

Pan-genome similarity matrix, patient and isolate data, and maximum likelihood tree based on core and accessory genomes. (a) Maximum likelihood phylogenetic tree based on the alignment of accessory genomes was generated using FastTree 261. *indicates reference genomes. (b) Patient metadata including specimen type, age, ST, K-type, sex (M: male; F: female), country (LEB: Lebanon; SPA: Spain; USA: United States of America; CAN: Canada; GER: Germany), and collection date. (c) Pan-genome was constructed using Roary based on the core and accessory genes showing phylogenetic relatedness of the isolates by blue (present) and white (absent) fragments60.

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