Table 2 Calculated angles15, center of mass displacement (COMdisp) and radius of gyration (Rg) for MjTX-II/RA, MjTX-II/ASA and other PLA2-like toxins quaternary structures.
PDB id | Toxin | Roll (°) | Twist (°) | Tilt (°) | COMdisp (Å) | Rg (Å) |
|---|---|---|---|---|---|---|
3IQ3 | BthTX-I/PEG4K | 178 | 28 | 27 | 2.5 | 18.1 |
4K06 | MTX-II/PEG4K | 178 | 28 | 27 | 3.0 | 18.3 |
3QNL | PrTX-I/RA | 173 | 24 | 34 | 1.7 | 18.5 |
6B84 | apo-MjTX-II | 164 | 22 | 73 | 7.9 | 18.7 |
6B81 | MjTX-II/FA8 | 167 | 24 | 59 | 4.0 | 18.5 |
6B80 | MjTX-II/FA14 | 170 | 21 | 51 | 0.0 | 18.5 |
6MQF | MjTX-II/ASA* | 165 | 36 | 41 | 12.7 | 20.1 |
6MQD | MjTX-II/RA | 166 | 35 | 47 | 13.3 | 20.0 |
-# | MjTX-II/RA | 198 | 62 | 67 | 31.5 | 21.8 |
-# | MjTX-II/ASA | 130 | 7 | 38 | 3.3 | 20.1 |
-# | Unbound MjTX-II | 167 | 6 | 12 | 9.7 | 20.5 |
-# | MjTX-II/FA | 178 | 32 | 40 | 11.2 | 19.5 |
-# | MjTX-II/FA§ | 179 | 42 | 33 | 6.2 | 18.7 |