Table 5 Innate immune cell marker comparison.

From: Whole Transcriptome Analysis of Renal Intercalated Cells Predicts Lipopolysaccharide Mediated Inhibition of Retinoid X Receptor alpha Function

Gene Symbol

^Our pooled IC Mean

#Chen et al.22 pooled IC Mean^

^Our Single cell IC Mean (n = 4)

^Our pooled PC Mean

#Chen et al.22 pooled PC Mean^

Antimicrobial peptide genes

Adm

161.7

123.6

not detected

40.4

72.6

Defb1

8210.5

1973.5

598.2

5797.2

1263.2

Scg5

240.6

52.6

26.7

186.0

41.2

Bacteriostatic nutrient metal scavenger genes

Lcn2

0.6

14.4

not detected

63.0

120.6

S100g

46394.7

4462.4

5267.5

18584.8

1229.6

S100a11

557.7

743.2

16

777.8

not listed

Phagocytosis/endocytosis genes

Cav1

202.0

104.2

not detected

128.8

497.2

Cav2

450.0

388.7

not detected

213.6

759.4

Rab7

3710.2

314.7

8.25

2988.7

279.9

Inflammatory signaling genes

Irf3

321.7

39.5

98

333.7

47.9

Il1r1

113.7

17.6

not detected

83.1

26.9

Apoe

1245.8

419.7

422.3

1766.0

2420.0

Spp1

18131

3524

1715.7

14659.5

1556.8

Mmp11

8

8.6

128.5

not detected

4.7

Klk1

124448

6039.2

4927

66958.6

899.8

Pattern recognition receptor genes

Tlr1

1.3

6.2

not detected

22.5

13.3

Tlr2

nd

8.4

not detected

not detected

26.8

Tlr3

130.6

13.4

not detected

138.4

9.5

Tlr4

not detected

3.6

not detected

not detected

13.9

Tril

4.9

2.3

not detected

25.6

8.88

Inflammasome genes

Nlrc3

34.4

0.5

not detected

27.1

0.7

Naip1

not detected

0.1

not detected

not detected

not listed

  1. ^This RNASeq data was obtained using conditional mice expressing tdTomato on V-ATPase-B1 cre (presumed intercalated cells) and AQP2-cre (presumed principal cells). Data presented as mean normalized read count normalized using DEseq2.
  2. #This RNASeq data was collected from wild type C57BL/6 mice using DBA lectin (presumed principal cells) and c-kit (presumed intercalated cells) and C1 fluidigm for single cell RNAseq. Data presented as mean TPM (transcripts per kilobase Million) and was acquired from the supplemental data 03 (pooled cells, “All C-Kit(ICs) vs DBA(PCs) from Chen L and et al.22.