Table 2 Number of genes associated with the general cluster of orthologous group (COG) functional categories.
From: Genome analysis of a thermophilic exopolysaccharide-producing bacterium - Geobacillus sp. WSUCF1
COG code | Number of genes | Percentage | Description |
|---|---|---|---|
Cellular processes and signaling | |||
D | 26 | 0.62 | Cell cycle control, cell division, chromosome partitioning |
M | 132 | 3.11 | Cell wall/membrane/envelope biogenesis |
N | 39 | 0.93 | Cell motility |
O | 81 | 1.88 | Post-translational modification, protein turnover, and chaperones |
T | 104 | 2.32 | Signal transduction mechanisms |
U | 23 | 0.55 | Intracellular trafficking, secretion, and vesicular transport |
V | 39 | 0.93 | Defense mechanisms |
W | 0 | 0 | Extracellular structures |
Y | 0 | 0 | Nuclear structure |
Z | 0 | 0 | Cytoskeleton |
Information storage and processing | |||
A | 0 | 0 | RNA processing and modification |
B | 0 | 0 | Chromatin structure and dynamics |
J | 132 | 3.15 | Translation, ribosomal structure and biogenesis |
K | 168 | 4.02 | Transcription |
L | 140 | 3.35 | Replication, recombination and repair |
Metabolism | |||
C | 162 | 3.87 | Energy production and conversion |
E | 212 | 5.07 | Amino acid transport and metabolism |
F | 54 | 1.29 | Nucleotide transport and metabolism |
G | 155 | 3.58 | Carbohydrate transport and metabolism |
H | 103 | 2.44 | Coenzyme transport and metabolism |
I | 85 | 2.03 | Lipid transport and metabolism |
P | 142 | 3.27 | Inorganic ion transport and metabolism |
Q | 41 | 0.93 | Secondary metabolites biosynthesis, transport, and catabolism |
Poorly characterized | |||
R | 225 | 5.38 | General function prediction only |
S | 637 | 15.22 | Function unknown |
– | 1509 | 36.06 | Not in COGs |
