Figure 2 | Scientific Reports

Figure 2

From: Comparative transcriptome analysis reveals relationship of three major domesticated varieties of Auricularia auricula-judae

Figure 2

Analytical framework of the A. auricula-judae transcriptome. Raw reads of each of the three varieties were filtered and then de novo assembled into contigs by Trinity. Unigenes were obtained by clustering the contigs with TGICL. FPKM values were calculated for each of the unigenes, and only unigenes with FPKM >1.0 in any of the three varieties were used for further analyses and annotation against the public databases.

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