Table 1 Dissociation constants obtained for the different complexes. [a]SPR data were obtained as described in Fig. 3, with partner 2 (analyte) in solution and partner 1 (ligand) immobilized on the sensor chip surface. KD values were determined using the Langmuir model. Errors on the KD values were obtained according to: ΔKD = KD * (Δkon/kon + Δkoff/koff). [b]ITC experiments were obtained as described in Fig. 2. Partner 2 injected from the syringe in the cell, containing partner 1. ITC data were treated using a model assuming equivalent and independent sites. [c]UCA experiments depicted in Figure S3. [d]FRET experiments depicted in Fig. 5. FRET intensities plotted as a function of total Ligand were fitted as described in Material and methods section. [e]Constants describing the intrinsic properties of the bidomains (Kintra A3_A3 and Kintra A3_bGFPD) defined in Figure S5.
From: Ligand-induced conformational switch in an artificial bidomain protein scaffold
Partner 1 | Partner 2 | KD (nM) | |||||
|---|---|---|---|---|---|---|---|
SPR[a] | ITC[b] | UCA[c] | FRET[d] | Constant definition[e] | |||
A3 | VS | bA3-2 | 1.1 ± 0.1 | 4.5 ± 7.0 | KD1 | ||
bGFPD | eGFP | 2.3 ± 0.1 | 2.7 ± 2.0 | ||||
BFP | 5 ± 2.0 | ||||||
A3 | A3 | n.a. | 37 ± 6 | KD A3A3 | |||
A3 | bGFPD | 4.1 ± 1.3 103 | 3.3 ± 0.9 103 | KD A3bGFPD | |||
A3_A3 | bA3-2 | 46.0 ± 2.5 | 37 ± 7 | 623 ± 86 | Kapp1 | ||
A3_A3 + excess bA3-17 | bA3-2 | — | 9.7 ± 1.5 | ||||
A3_A3 + excess bA3-2 | bA3-17 | — | n.a. | ||||
A3_bGFPD | bA3-2 | — | 77 ± 13 | 57 ± 10 | Kapp2 | ||
A3_bGFPD | eGFP | 12.5 ± 1.2 | 40 ± 4 | ||||
BFP | 134 ± 20 | ||||||
A3_bGFPD + excess eGFP | bA3-2 | — | 21 ± 10 | ||||
A3_bGFPD + excess bA3-2 | eGFP | — | 8.9 ± 2.1 | ||||