Table 1 Dissociation constants obtained for the different complexes. [a]SPR data were obtained as described in Fig. 3, with partner 2 (analyte) in solution and partner 1 (ligand) immobilized on the sensor chip surface. KD values were determined using the Langmuir model. Errors on the KD values were obtained according to: ΔKD = KD * (Δkon/kon + Δkoff/koff). [b]ITC experiments were obtained as described in Fig. 2. Partner 2 injected from the syringe in the cell, containing partner 1. ITC data were treated using a model assuming equivalent and independent sites. [c]UCA experiments depicted in Figure S3. [d]FRET experiments depicted in Fig. 5. FRET intensities plotted as a function of total Ligand were fitted as described in Material and methods section. [e]Constants describing the intrinsic properties of the bidomains (Kintra A3_A3 and Kintra A3_bGFPD) defined in Figure S5.

From: Ligand-induced conformational switch in an artificial bidomain protein scaffold

Partner 1

 

Partner 2

KD (nM)

 

SPR[a]

ITC[b]

UCA[c]

FRET[d]

Constant definition[e]

A3

VS

bA3-2

1.1 ± 0.1

4.5 ± 7.0

  

KD1

bGFPD

eGFP

2.3 ± 0.1

2.7 ± 2.0

   

BFP

 

5 ± 2.0

   

A3

A3

 

n.a.

37 ± 6

 

KD A3A3

A3

bGFPD

 

4.1 ± 1.3 103

3.3 ± 0.9 103

 

KD A3bGFPD

A3_A3

bA3-2

46.0 ± 2.5

37 ± 7

 

623 ± 86

Kapp1

A3_A3 + excess bA3-17

bA3-2

9.7 ± 1.5

   

A3_A3 + excess bA3-2

bA3-17

n.a.

   

A3_bGFPD

bA3-2

77 ± 13

 

57 ± 10

Kapp2

A3_bGFPD

eGFP

12.5 ± 1.2

40 ± 4

   

BFP

   

134 ± 20

 

A3_bGFPD + excess eGFP

bA3-2

21 ± 10

   

A3_bGFPD + excess bA3-2

eGFP

8.9 ± 2.1