Figure 4 | Scientific Reports

Figure 4

From: Diagnosis and characterization of canine distemper virus through sequencing by MinION nanopore technology

Figure 4The alternative text for this image may have been generated using AI.

Phylogenetic analysis of H protein encoding gene sequences retrieved from GenBank. Accession numbers are provided. Philogeny carried out by Mr Bayes program implemented within the software package Geneious [version 9.1.8]. Bayesian inference was performed using four “chains” run over one million generations (with the first 2000 trees discarded as ‘burn-in) and supplying statistical support with subsampling over 200 replicates. jModelTest was used to identify the most appropriate model of evolution. The identified program settings for all partitions, under the Akaike Information Criteria, included six-character states (General Time Reversible model), a proportion of invariable sites, and a gamma distribution of rate variation across sites (GTR + I + G). H gene sequence of Phocine distemper virus has been used as outgroup. Strain CDV1747/ITL2018 is indicated by a red arrow. Putative CDV lineages are indicated by brackets. Bar indicates the estimated number of nt substitutions per site.

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