Table 1 Nucleotide (nt) sequence identity (expressed as %) between the H protein gene sequence of CDV1747/ITL2018 and representative strains belonging to existing CDV lineages.
CDV strains | CDV1747/2018 | Th270L | 19876 | Snyder Hill | Rockborn | Yanaka | SNP350/09/ITA | A75/17 | CDV599/2016 | Argentina 26 | 39-CO/12 | 07D111 | 4L70214 | CDV2784/2013 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
nt | nt | nt | nt | nt | nt | nt | nt | nt | nt | nt | nt | nt | nt | |
CDV1747/ITL2018 | / | 96.29 | 96.59 | 90.89 | 95.48 | 93.11 | 93.72 | 95.29 | 93.05 | 93.47 | 93.23 | 92.08 | 93.05 | 92.44 |
Th270L | 96.29 | / | 96.09 | 91.01 | 95.42 | 94.23 | 94.11 | 95.49 | 93.81 | 94.29 | 94.66 | 92.35 | 93.69 | 93.02 |
19876 | 96.59 | 96.09 | / | 91.07 | 95.32 | 93.93 | 93.81 | 95.81 | 93.69 | 94.49 | 94.29 | 92.71 | 93.38 | 92.71 |
Snyder Hill | 90.89 | 91.01 | 91.07 | / | 93.14 | 91.20 | 91.38 | 92.59 | 90.95 | 91.74 | 91.86 | 90.89 | 92.05 | 91.20 |
Rockborn | 95.48 | 95.42 | 95.32 | 93.14 | / | 96.54 | 96.84 | 98.48 | 96.05 | 96.66 | 96.66 | 94.84 | 96.11 | 95.08 |
Yanaka | 93.11 | 94.23 | 93.93 | 91.20 | 96.54 | / | 94.54 | 96.17 | 94.11 | 94.35 | 94.47 | 93.08 | 94.29 | 92.96 |
SNP350/09/ITA | 93.72 | 94.11 | 93.81 | 91.38 | 96.84 | 94.54 | / | 96.24 | 94.29 | 94.54 | 94.74 | 92.90 | 94.11 | 93.26 |
A75/17 | 95.29 | 95.49 | 95.81 | 92.59 | 98.48 | 96.17 | 96.24 | / | 95.63 | 96.24 | 96.30 | 94.35 | 95.69 | 94.66 |
CDV599/2016 | 93.05 | 93.81 | 93.69 | 90.95 | 96.05 | 94.11 | 94.29 | 95.63 | / | 94.17 | 94.11 | 92.29 | 93.62 | 92.77 |
Argentina 26 | 93.47 | 94.29 | 94.49 | 91.74 | 96.66 | 94.35 | 94.54 | 96.24 | 94.17 | / | 94.60 | 92.65 | 94.29 | 92.96 |
39-CO/12 | 93.23 | 94.66 | 94.29 | 91.86 | 96.86 | 94.47 | 94.74 | 96.30 | 94.11 | 94.60 | / | 93.02 | 94.60 | 93.14 |
07D111 | 92.08 | 92.35 | 92.71 | 90.89 | 94.84 | 93.08 | 92.90 | 94.35 | 92.29 | 92.65 | 93.02 | / | 93.62 | 92.65 |
4L70214 | 93.05 | 93.69 | 93.38 | 92.05 | 96.11 | 94.29 | 94.11 | 95.69 | 93.62 | 94.29 | 94.60 | 93.62 | / | 94.29 |
CDV2784/2013 | 92.44 | 93.02 | 92.71 | 91.20 | 95.08 | 92.96 | 93.26 | 94.66 | 92.77 | 92.96 | 93.14 | 92.65 | 94.29 | / |
