Table 2 Protein identification through MASCOT search.

Group No.	Ion score^a	Mass (M_r)	Cal. PI	Matched	Seq. coverage (%)	NCBI ID	Protein name
Increased in plasma treated bacteria
1	488	50,531	5.05	17	22	gi\|489324429	glutamine synthetase
2	404	52,730	5.54	23	18	gi\|489316613	Aspartate ammonia-lyase
3	620	43,680	4.92	30	28	gi\|489327768	elongation factor Tu
4	252	40,330	5.01	8	15	gi\|158431169	Chain A, Ftsz
5	686	39,803	4.95	31	33	gi\|1303956	YqjE
6	171	35,022	4.81	7	8	gi\|489314681	Phosphate acetyltransferase
7	416	17,530	9.84	19	40	gi\|143575	spc ORF1; S5
Decreased in plasma treated bacteria
8							No significant results
9	1,222	46,503	5.03	89	45	gi\|489322113	isocitrate dehydrogenase (NADP⁺)
10	1,039	32,448	5.17	59	60	gi\|489324622	elongation factor Ts
11	98	22,882	9.88	4	8	gi\|489244217	30S ribosomal protein S4
12	238	16,734	9.55	18	26	gi\|351468459	50S ribosomal protein L6
13	83	17,241	5.15	5	10	gi\|449028147	hypothetical protein C663_1583
14							No significant results

^aIons score is −10*Log(P), where P is the probability that the observed match is a random event. Individual ions scores >35 indicate identity or extensive homology (p < 0.05). Database: NCBInr (85,104,145 sequences; 31,181,569,036 residues). Taxonomy: Bacillus subtilis (133,129 sequences).

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