Table 2 Characteristics of individual studies included in the miRNA meta-analysis of hypoxic exposure.
From: micro-RNAs dependent regulation of DNMT and HIF1α gene expression in thrombotic disorders
S. No. | GEO accession no. | Platform of dataset | Samples(Ctl/exp) | No. of miRNAs | Organism | Sample source | Platform | Model of generating expression summaries | Reference |
|---|---|---|---|---|---|---|---|---|---|
1 | [GSE47532] | GPL8227 | (n = 11) 3/8 | 820 | Homo Sapiens | breast cancer cell line MCF-7 | Agilent-019118 Human miRNA Microarray 2.0 G4470B | log2 transformed and quantile normalized | |
2 | [GSE60432 12 h] | GPL14550 | (n = 08) 4/4 | 851 | Homo Sapiens | human placental trophoblast cells | Agilent-028004 SurePrint G3 Human GE 8 × 60 K Microarray | log2 transformed and quantile normalized | |
[GSE60432 24 h] | GPL14550 | (n = 08) 4/4 | 851 | Homo Sapiens | human placental trophoblast cells | Agilent-028004 SurePrint G3 Human GE 8 × 60 K Microarray | log2 transformed and quantile normalized | ||
[GSE60432 48 h] | GPL14550 | (n = 08) 4/4 | 851 | Homo Sapiens | human placental trophoblast cells | Agilent-028004 SurePrint G3 Human GE 8 × 60 K Microarray | log2 transformed and quantile normalized | ||
[GSE60432 72 h] | GPL14550 | (n = 08) 4/4 | 851 | Homo Sapiens | human placental trophoblast cells | Agilent-028004 SurePrint G3 Human GE 8 × 60 K Microarray | log2 transformed and quantile normalized | ||
3 | [GSE68593] | GPL20157 | (n = 06) 3/3 | 1907 | Homo Sapiens | Hepatocellular Carcinoma cells | Agilent-041686 Unrestricted Human miRNA Microarray | log2 transformed and quantile normalized |
