Table 2 Number of true sites which can be described as combinations of templates.

From: Predicting protein-peptide interaction sites using distant protein complexes as structural templates

Template library

# protein-peptide interactions that can be modeled

All templates

408 (81.3%)

Only peptide-binding templates

369 (73.5%)

Only non-peptide templates

340 (67.7%)

Random

54 (10.8%) σ = 5.85

Total sites

502 (100.0%)

  1. Number of peptide interactions found in the test set containing 502 interaction sites, depending on the used template library. All templates correspond to all templates in the interaction library, Only peptide-binding templates is the subset of all templates that involve peptide interactions, Only non-peptide templates is the subset of all templates that do not involve peptides, Random is what would be expected by chance, and was generated by randomly predicting n number of residues on the surface of the protein as interacting, where n is the number of interacting residues in the native structure, Total is the total number of sites in the test set. No templates matching the target with BLAST E < 0.001 were used.
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