Table 4 Variations of the expression of genes involved in rhamnose and 1,2-propanediol degradation.
From: Metabolic adaptation of adherent-invasive Escherichia coli to exposure to bile salts
Name | Product | Gene size | RNA-seq values (minimal medium) | RNA-seq values (bile salts) | Fold change | Fold change | p value |
|---|---|---|---|---|---|---|---|
(bp) | RPKM | RPKM | (Log2) | ||||
rhaA | L-rhamnose isomerase | 1259 | 376 | 39 | 9.7 | 3.27 | 2.279E-24 |
rhaB | Rhamnulokinase | 1469 | 452 | 65 | 7.0 | 2.80 | 3.564E-19 |
rhaD | Rhamnulose-1-phosphate aldolase | 824 | 554 | 303 | 1.8 | 0.87 | 3.341E-03 |
fucO | propanediol oxydoreductase | 1151 | 510 | 234 | 2.2 | 1.12 | 5.724E-06 |
pduB | polyhedral bodies | 812 | 71 | 203 | 2.8 | 1.51 | 3.202E-07 |
pduC | glycerol dehydratase large subunit | 1664 | 251 | 532 | 2.1 | 1.08 | 3.910E-06 |
pduD | diol dehydratase medium subunit | 668 | 110 | 236 | 2.2 | 1.11 | 5.478E-04 |
pduE | diol dehydratase small subunit | 518 | 39 | 118 | 3.1 | 1.62 | 7.898E-06 |
pduG | diol dehydratase reactivation | 1832 | 185 | 494 | 2.7 | 1.42 | 8.661E-08 |
pduH | diol dehydratase reactivation | 350 | 71 | 174 | 2.4 | 1.29 | 4.274E-05 |
pduJ | polyhedral bodies | 275 | 42 | 135 | 3.2 | 1.69 | 2.362E-07 |
pduK | polyhedral bodies | 422 | 16 | 59 | 3.7 | 1.89 | 1.644E-06 |
pduL | Phosphate propanoyltransferase | 632 | 53 | 134 | 2.6 | 1.35 | 5.949E-05 |
pduM | propanediol utilization protein | 491 | 78 | 233 | 3.0 | 1.59 | 2.260E-07 |
pduN | polyhedral bodies | 275 | 48 | 90 | 1.9 | 0.91 | 1.456E-02 |
pduO | propanediol utilization: B12 related | 1007 | 106 | 261 | 2.5 | 1.30 | 6.990E-06 |
pduP | propionaldehyde dehydrogenase | 1112 | 81 | 211 | 2.6 | 1.39 | 2.872E-06 |
pduQ | Propanol dehydrogenase | 1343 | 125 | 416 | 3.3 | 1.74 | 3.516E-09 |
pduT | polyhedral bodies | 554 | 55 | 157 | 2.8 | 1.51 | 1.503E-05 |
pduU | polyhedral bodies | 350 | 95 | 102 | 1.1 | 0.11 | 7.703E-01 |
pduV | propanediol utilization protein | 443 | 188 | 152 | −1.2 | −0.31 | 2.703E-01 |
