Table 2 Redundancy of TYLCV vsRNAs.

From: Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato

Number of counts per vsRNA

% vsRNA (20–25 nt)

Agrob-TYLCV

Bemisia-TYLCV

7 dpi

14 dpi

21 dpi

7 dpi

14 dpi

21 dpi

1–10VS

37.35

27.31

26.97

42.04

28.35

26.47

1–10CS

40.04

27.41

27.58

47.21

29.05

26.64

10–100VS

9.25

16.12

15.93

4.63

15.76

16.42

10–100CS

10.10

17.13

16.77

5.26

16.33

17.42

100–1000VS

1.43

4.92

5.29

0.43

4.35

5.36

100–1000CS

1.66

5.57

5.74

0.41

4.96

5.81

>1000VS

0.09

0.70

0.79

0.01

0.57

0.89

>1000CS

0.08

0.85

0.93

0.01

0.63

1.00

Total-Unique vsRNA

13050

23424

22768

7366

20813

21813

  1. Tomato plants were infected by either agroinoculation (Agrob-TYLCV) or using B. tabaci (Bemisia-TYLCV). Data from different time points during the systemic infection are shown (7, 14 and 21 dpi). Unique 20–25 nt vsRNA were classified according to the strand where they mapped (VS or CS) and to the number of counts in intervals 1 to 10, 10 to 100, 100 to 1000 and >1000 reads. The values indicate the percentage (%) of vsRNA according to the number of counts on each interval using the average from the two biological replicates. The total number of unique vsRNA (20–25 nt) at each dpi is shown.
Back to article page