Table 1 Summary statistics of the linkage groups constructed using the population arising from the cross ‘Maehyang × Albion’ along with their physical distances on the F. vesca_v4.0.a1 genome sequences.

From: High density linkage map construction and QTL mapping for runner production in allo-octoploid strawberry Fragaria × ananassa based on ddRAD-seq derived SNPs

SL

Linkage group

Length (cM)

First and last mapped marker

Total no. of mapped markers

Average interval (cM/locus)

Longest gap (cM)

F. vesca chromo-some

LG physical start (bp)a

LG physical end (bp)b

Physical Span (bp)c

1

LG1A

95.25

FAN4524-FAN3690

54

1.76

9.64

Fvb1

112529

16227481

16114952

2

LG1B1

55.99

FAN4683-FAN4149

17

3.29

7.78

Fvb1

144009

4479442

4335433

3

LG1B2

46.33

FAN722-FAN1648

18

2.57

6.47

Fvb1

1383360

5403172

4019812

4

LG1C1

50.53

FAN379-FAN195

26

1.94

8.31

Fvb1

6183315

10129223

3945908

5

LG1C2

29.13

FAN986-FAN1451

23

1.27

7.36

Fvb1

7969400

20650547

12681147

6

LG1D1

83.11

FAN3231-FAN4379

34

2.44

9.88

Fvb1

3921057

18970557

15049500

7

LG1D2

58.98

FAN2399-FAN3722

28

2.11

6.76

Fvb1

7438667

19123178

11684511

8

LG2A1

48.88

FAN578-FAN708

24

2.04

7.14

Fvb4

804175

11904624

11100449

9

LG2A2

41.55

FAN1639-FAN888

20

2.08

6.38

Fvb4

425782

13276588

12850806

10

LG2B

69.78

FAN4435-FAN2296

45

1.55

7.09

Fvb2

267888

28873870

28605982

11

LG2C1

51.38

FAN1395-FAN1208

23

2.23

7.86

Fvb2

5674815

29167427

23492612

12

LG2C2

32.94

FAN4648-FAN3287

15

2.20

8.59

Fvb2

15750516

19803671

4053155

13

LG2D1

48.82

FAN3904-FAN3422

30

1.63

13.42

Fvb2

24250389

29150635

4900246

14

LG2D2

28.93

FAN3803-FAN2729

9

3.21

8.09

Fvb2

21804777

26832106

5027329

15

LG3A1

69.38

FAN5-FAN1270

29

2.39

11.75

Fvb3

26607

12531139

12504532

16

LG3A2

71.72

FAN1772-FAN471

28

2.56

19.38

Fvb3

2288930

37706799

35417869

17

LG3B1

55.36

FAN3902-FAN3420

25

2.21

4.12

Fvb3

3610045

14574195

10964150

18

LG3B2

48.96

FAN2357-FAN3427

19

2.58

11.49

Fvb3

8122733

13333825

5211092

19

LG3C1

56.48

FAN639-FAN1500

20

2.82

10.76

Fvb3

12328117

36511410

24183293

20

LG3C2

72.33

FAN1607-FAN1528

29

2.49

6.38

Fvb3

17089842

38167538

21077696

21

LG3D1

34.68

FAN3688-FAN4482

21

1.65

10.02

Fvb3

33191108

37766726

4575618

22

LG3D2

40.92

FAN2345-FAN2466

14

2.92

12.77

Fvb3

30017669

38165007

8147338

23

LG4A1

55.10

FAN3622-FAN2319

21

2.62

12.32

Fvb4

1372325

19654576

18282251

24

LG4A2

45.95

FAN1912-FAN1940

15

3.28

6.75

Fvb4

572887

22338700

21765813

25

LG4B1

32.73

FAN2769-FAN4509

10

3.27

14.41

Fvb4

2824575

4495688

1671113

26

LG4B2

52.26

FAN770-FAN2079

29

1.80

5.34

Fvb4

6686516

27802611

21116095

27

LG4C

57.91

FAN2026-FAN802

51

1.14

3.89

Fvb4

344401

33602364

33257963

28

LG4D

80.28

FAN4418-FAN4506

66

1.22

8.99

Fvb4

1119936

33498276

32378340

29

LG5A1

47.20

FAN564-FAN1164

13

3.63

13.32

Fvb5

319932

2289061

1969129

30

LG5A2

44.43

FAN34-FAN55

13

3.42

13.37

Fvb5

7581891

9861778

2279887

31

LG5B

81.79

FAN1402-FAN1895

24

3.41

20.94

Fvb5

3768759

18410022

14641263

32

LG5C

72.80

FAN23-FAN277

54

1.35

4.47

Fvb5

130730

15080365

14949635

33

LG5D

115.84

FAN3920-FAN3267

73

1.59

11.00

Fvb5

21228806

27416727

6187921

34

LG6A1

61.62

FAN3018-FAN4591

38

1.62

6.24

Fvb6

2083928

7251058

5167130

35

LG6A2

45.34

FAN1259-FAN1931

23

1.97

10.04

Fvb6

70354

11645796

11575442

36

LG6B1

54.78

FAN1173-FAN1487

41

1.34

5.05

Fvb6

1660733

10248262

8587529

37

LG6B2

55.64

FAN3781-FAN3954

31

1.79

7.67

Fvb6

5864047

15255602

9391555

38

LG6C1

35.35

FAN2722-FAN2922

25

1.41

3.31

Fvb6

10630696

20387841

9757145

39

LG6C2

75.55

FAN675-FAN570

25

3.02

10.68

Fvb6

3657849

27953227

24295378

40

LG6D1

43.69

FAN3811-FAN3854

35

1.25

4.88

Fvb6

30923227

39197465

8274238

41

LG6D2

51.45

FAN616-FAN1739

28

1.84

6.17

Fvb6

15955826

37293159

21337333

42

LG7A

68.14

FAN3436-FAN4253

19

3.59

10.79

Fvb7

1700487

8698128

6997641

43

LG7B

64.28

FAN1537-FAN656

29

2.22

7.15

Fvb7

7860566

22021634

14161068

44

LG7C1

52.37

FAN3699-FAN4557

26

2.01

7.16

Fvb7

5168144

20476274

15308130

45

LG7C2

40.51

FAN458-FAN180

26

1.56

7.56

Fvb7

17500684

24064058

6563374

46

LG7D

55.15

FAN170-FAN1606

27

2.04

8.11

Fvb7

16557672

24078363

7520691

Total

n/a

2581.57

n/a

1268

2.22

n/a

n/a

n/a

n/a

184.33 Mb d

  1. a,bThe overall physical start and end positions of all markers of one linkage group (that are usually mapped to a particular F. vesca chromosome) in the F. vesca_v4.0.a1 genome.
  2. cThe distance between the LG physical start and LG physical end that indicates the overall physical span of all the markers of one linkage group in a particular chromosome of the F. vesca_v4.0.a1 genome.
  3. dThe sum of chromosome-wise overall physical distances (span between the first and last mapped markers in a particular F. vesca chromosome) covered by the markers in all seven F. vesca (v4.0.a1 genome) chromosomes.