Table 2 Statistics on whole genome sequencing of 14 castor inbred lines.
Genotype | Number of raw reads | Total data (Gb) | Number of filtered reads | Alignment (%) | Genome coverage (%) | Platform used |
|---|---|---|---|---|---|---|
JI220 | 11,251,618 | 5.40 | 10,531,223 | 89.76 | 94.63 | MiSeq |
JC12 | 12,626,709 | 7.20 | 11,906,343 | 96.91 | 94.97 | MiSeq |
TMV5 | 62,392,969 | 12.47 | 57,398,835 | 97.36 | 95.57 | HiSeq |
RG72 | 59,087,998 | 11.80 | 55,979,084 | 96.51 | 95.29 | HiSeq |
RG3309 | 70,686,223 | 14.13 | 66,770,385 | 95.66 | 95.04 | HiSeq |
DPC9 | 65,820,623 | 13.10 | 60,207,321 | 96.37 | 95.50 | HiSeq |
RG43 | 12,787,405 | 5.90 | 11,622,830 | 87.41 | 92.84 | MiSeq |
48-1 | 51,270,973 | 10.25 | 48,407,365 | 97.26 | 95.50 | HiSeq |
RG1139 | 73,466,140 | 14.69 | 69,352,963 | 97.83 | 97.02 | HiSeq |
RG2787 | 63,835,573 | 12.76 | 58,743,049 | 95.58 | 95.57 | HiSeq |
RG2819 | 62,782,508 | 12.55 | 58,926,757 | 96.90 | 95.70 | HiSeq |
VP1 | 62,126,053 | 12.42 | 58,885,533 | 98.09 | 95.63 | HiSeq |
DCS9 | 75,062,342 | 15.00 | 62,244,984 | 97.41 | 94.87 | HiSeq |
RG3216 | 108,880,111 | 22.00 | 91,131,064 | 97.73 | 97.39 | HiSeq |
