Table 3 Functional enrichment in gene ontology (GO) terms and KEGG pathways of A and P monogenomic expressing (MGE) gene groups in liver and juveniles’ libraries irrespective of ploidy level.
From: Allele-specific expression variation at different ploidy levels in Squalius alburnoides
MGE | Category | Term description | # | p | |
|---|---|---|---|---|---|
Liver | P | CC | Intratracellular part | 28 | 1,10E-02 |
CC | cytoplasm | 21 | 1,90E-02 | ||
CC | intracellular | 28 | 3,10E-02 | ||
A | NS | ||||
Juveniles | P | NS | |||
A | BP | translation | 10 | 8,60E-04 | |
BP | peptide biosynthetic process | 10 | 4,80E-04 | ||
BP | organonitrogen compound biosynthetic process | 12 | 5,90E-04 | ||
BP | amide biosynthetic process | 10 | 5,00E-04 | ||
BP | peptide metabolic process | 10 | 6,50E-04 | ||
BP | organonitrogen compound metabolic process | 13 | 1,30E-03 | ||
BP | cellular amide metabolic process | 10 | 1,60E-03 | ||
BP | cellular protein metabolic process | 17 | 1,50E-02 | ||
BP | protein metabolic process | 18 | 2,30E-02 | ||
CC | cytosolic part | 8 | 6,40E-06 | ||
CC | cytosolic ribosome | 6 | 8,30E-05 | ||
CC | ribosome | 7 | 9,40E-05 | ||
CC | cytosolic large ribosomal subunit | 5 | 1,30E-04 | ||
CC | ribonucleoprotein complex | 9 | 2,10E-04 | ||
CC | intracellular ribonucleoprotein complex | 9 | 2,10E-04 | ||
CC | ribosomal subunit | 6 | 1,90E-04 | ||
CC | large ribosomal subunit | 5 | 3,50E-04 | ||
CC | intracellular part | 30 | 3,80E-04 | ||
CC | cytoplasm | 23 | 7,80E-04 | ||
CC | cytoplasmic part | 18 | 8,00E-04 | ||
CC | cytosol | 8 | 2,50E-03 | ||
CC | intracellular | 30 | 2,70E-03 | ||
CC | intracellular non-membrane-bounded organelle | 12 | 4,50E-03 | ||
CC | non-membrane-bounded organelle | 12 | 4,50E-03 | ||
CC | macromolecular complex | 16 | 7,10E-03 | ||
CC | intracellular organelle | 23 | 2,80E-02 | ||
CC | organelle | 23 | 3,20E-02 | ||
MF | structural constituent of ribosome | 8 | 3,70E-05 | ||
MF | structural molecule activity | 9 | 7,20E-04 | ||
MF | rRNA binding | 4 | 4,00E-03 | ||
