Table 1 GO and KEGG enrichment for up-regulated DEGs.

From: Integrative comparative analyses of metabolite and transcript profiles uncovers complex regulatory network in tomato (Solanum lycopersicum L.) fruit undergoing chilling injury

Category

Term

Name

Count

P-Value

Biological Process

GO:0006270

DNA replication initiation

6

0.00207

Biological Process

GO:0052696

flavonoid glucuronidation

16

0.002376

Biological Process

GO:0015979

Photosynthesis

11

0.002461

Biological Process

GO:0009813

flavonoid biosynthetic process

16

0.004199

Biological Process

GO:0009735

response to cytokinin

6

0.005635

Biological Process

GO:0000103

sulfate assimilation

7

0.015144

Biological Process

GO:0006541

glutamine metabolic process

5

0.020492

Biological Process

GO:0009693

ethylene biosynthetic process

4

0.021628

Biological Process

GO:0009773

photosynthetic electron transport in photosystem I

3

0.041851

Cellular Component

GO:0009535

chloroplast thylakoid membrane

33

1.17E-09

Cellular Component

GO:0009570

chloroplast stroma

31

1.45E-07

Cellular Component

GO:0009941

chloroplast envelope

28

1.54E-07

Cellular Component

GO:0009507

Chloroplast

43

9.46E-06

Cellular Component

GO:0009654

photosystem II oxygen evolving complex

7

2.85E-04

Cellular Component

GO:0042555

MCM complex

4

0.001528

Cellular Component

GO:0043231

intracellular membrane-bounded organelle

19

0.003011

Cellular Component

GO:0009579

Thylakoid

6

0.003862

Cellular Component

GO:0019898

extrinsic component of membrane

6

0.004843

Cellular Component

GO:0010319

Stromule

4

0.025165

Cellular Component

GO:0005829

Cytosol

39

0.025596

Molecular Function

GO:0003678

DNA helicase activity

4

0.001548

Molecular Function

GO:0080043

quercetin 3-O-glucosyltransferase activity

13

0.004606

Molecular Function

GO:0080044

quercetin 7-O-glucosyltransferase activity

13

0.004606

Molecular Function

GO:0016671

oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

7

0.013155

Molecular Function

GO:0003824

catalytic activity

14

0.018301

Molecular Function

GO:0030170

pyridoxal phosphate binding

12

0.042889

KEGG_PATHWAY

sly01200

Carbon metabolism

34

5.41E-06

KEGG_PATHWAY

sly00710

Carbon fixation in photosynthetic organisms

16

1.23E-05

KEGG_PATHWAY

sly00195

Photosynthesis

15

1.24E-04

KEGG_PATHWAY

sly01100

Metabolic pathways

137

1.58E-04

KEGG_PATHWAY

sly01130

Biosynthesis of antibiotics

40

0.001247

KEGG_PATHWAY

sly01230

Biosynthesis of amino acids

23

0.006324

KEGG_PATHWAY

sly03030

DNA replication

8

0.012285

KEGG_PATHWAY

sly00030

Pentose phosphate pathway

8

0.018663

KEGG_PATHWAY

sly01110

Biosynthesis of secondary metabolites

76

0.027292

KEGG_PATHWAY

sly00920

Sulfur metabolism

6

0.039347

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