Table 2 Some lncRNAs were predicted as targets or endogenous target mimics (eTMs) of miRNAs in Chinese cabbage.
LncRNA | miRNA | miRNA sequence | LncRNA sequence |
|---|---|---|---|
Target | |||
TCONS_00042803 | bra-miR156a-5p | UGACAGAAGAGAGUGAGCAC | UGACAGAAGAGAGUGAGCAC |
TCONS_00032634 | bra-miR157a | UUGACAGAAGAUAGAGAGCAC | UUGACAGAAGAUAGAGAGCAC |
TCONS_00036147 | bra-miR158-5p | CUUUGUCUAUCGUUUGGAAAAG | CUUUGUCUAUCGUUUGGAAAAG |
TCONS_00035474 | bra-miR159a | UUUGGAUUGAAGGGAGCUCUA | UUUGGAUUGAAGGGAGCUCUA |
TCONS_00023440 | bra-miR160a-5p | UGCCUGGCUCCCUGUAUGCCA | UGCCUGGCUCCCUGUAUGCCA |
TCONS_00023440 | bra-miR160a-3p | GCGUAUGAGGAGCCAUGCAUA | GCGUAUGAGGAGCCAUGCAUA |
TCONS_00012562 | bra-miR162-5p | GGAGGCAGCGGUUCAUCGAUC | GGAGGCAGCGGUUCAUCGAUC |
TCONS_00007624 | bra-miR164a | UGGAGAAGCAGGGCACGUGCA | UGGAGAAGCAGGGCACGUGCA |
TCONS_00030024 | bra-miR164a | UGGAGAAGCAGGGCACGUGCA | UGGAGAAGCAGGGCACGUGC |
TCONS_00024317 | bra-miR167a | UGAAGCUGCCAGCAUGAUCUA | UGAAGCUGCCAGCAUGAUCUA |
TCONS_00000650 | bra-miR168a-5p | UCGCUUGGUGCAGGUCGGGA | UCGCUUGGUGCAGGUCGGGA |
TCONS_00037699 | bra-miR171a | UUGAGCCGUGCCAAUAUCACG | UUGAGCCGUGCCAAUAUCACG |
TCONS_00049086 | bra-miR172a | AGAAUCUUGAUGAUGCUGCAU | AGAAUCUUGAUGAUGCUGCAU |
TCONS_00014220 | bra-miR391-5p | UUCGCAGGAGAGAUAGCGCCA | UUCGCAGGAGAGAUAGCGCCA |
TCONS_00038487 | bra-miR396-5p | GCUCAAGAAAGCUGUGGGAAA | GCUCAAGAAAGCUGUGGGAAA |
eTM | |||
TCONS_00013120 | bra-miR156a-5p | UGACAGAAGA---GAGUGAGCAC | GGCUUCACUCUUCUCUUCUGACA |
TCONS_00032057 | bra-miR157a | UUGACAGAAG---AUAGAGAGCAC | UUGUUUUCUAUGUACUUCUGUCAC |
TCONS_00052940 | bra-miR159a | UUUGGAUUGA---AGGGAGCUCUA | AACGGUGCCCUUUGUCGAUCCAAA |
TCONS_00033140 | bra-miR160a-3p | GCGUAUGAGG---AGCCAUGCAUA | UGUGAAGGGUUCCUCUUCAUACGC |
TCONS_00026882 | bra-miR162-5p | GGAGGCAGCG---GUUCAUCGAUC | GCUUGAUGACGCUACGCUGCCUCC |
TCONS_00048391 | bra-miR164a | UGGAGAAGCA---GGGCACGUGCA | UUCAUGUGCUCAUUUCCUUCUCCA |
TCONS_00010856 | bra-miR164a | UGGAGAAGCA---GGGCACGUGCA | AUCGUUUGCCCGGAUGCUUCUUCA |
TCONS_00018697 | bra-miR172a | AGAAUCUUGA---UGAUGCUGCAU | UUGUCGUAUCAUAAUCAAGAUUCC |
TCONS_00033849 | bra-miR390-5p | AAGCUCAGGA---GGGAUAGCGCC | UGCAGUGUUUCCCAUCUUGAGCUU |
TCONS_00038455 | bra-miR408-5p | GGGAGCCAGG---GAAGAGGCAGU | GAGCUCUCUUCAUCUCGGGCUCUC |
