Table 2 Mapping statistics of clean reads of RNA sequencing data to reference rice genome in control and low light treated samples of rice varieties Swarnaprabha (low light tolerant) and IR8 (low light sensitive).

From: Comparative transcriptome profiling of low light tolerant and sensitive rice varieties induced by low light stress at active tillering stage

Sample name

Total clean reads

No of clean reads mapped to genome

% of all cleaned reads aligned to genome

SC

74265104

63238935

85.15

ST1

80200584

63490007

79.16

ST3

100681720

57860561

57.47

ST5

103713234

83221596

80.24

IC

76953876

50090966

65.09

IT1

116508410

101373634

87.01

IT3

69793880

57753147

82.75

IT5

75229152

58949766

78.36

Total

697345960

535978612

615.23

Mean

87168245

66997326.5

76.90

  1. SC- Swarnaprabha control, ST1- Swarnaprabha for 1 day low light treated; ST3- Swarnaprabha for 3 days low light treated; ST5- Swarnaprabha for 5 days low light treated; IC- IR8 control; IT1- IR8 for 1 day low light treated; IT3- IR8 for 3 days low light treated; IT5- IR8 for 5 days low light treated sample.
Back to article page