Table 1 Summary of genome assembly and annotation.
Assembly and annotation statistics | |
|---|---|
Number of genomic scaffolds | 703 |
N50 length (bp) | 398,572 |
Total number of nucleotides of genomic scaffolds (bp) | 39,026,461 |
Length of the longest scaffold (bp) | 1,651,988 |
Length of the shortest scaffold (bp) | 2,004 |
Average length of the scaffods (bp) | 55,514 |
Ratio of ‘N’ (%) | 1.9 |
GC content (%) | 44.9 |
tRNA genes | 194 |
rRNA genes | 3 |
Number of protein coding genes* | 11,823 |
Average gene length (bp) | 1,580.7 |
Average exon length (bp) | 222.8 |
Average number of exons per gene | 7.0 |
Number of genes annotated by sequences in UniProt | 6,468 |
Number of genes annotated by sequences in nr database | 10,821 |
Number of genes annotated by KEGG pathway | 1,878 |
Number of genes annotated by Gene Ontology | 5,841 |
Number of genes with no annotation | 91 |
