Table 1 A summary of the Deli dura x AVROS pisifera linkage map using genomic SNP markers, the selected genic SNP markers and estimated recombination rate.
From: Linkage-based genome assembly improvement of oil palm (Elaeis guineensis)
Linkage group | Linkage Length (cM) | No. of linked SNPs | No. of SNPs mapping in published genome | Chromosome size (Mb) | No. of selected genic SNPs | Average Recombination rate (cM/Mb) |
|---|---|---|---|---|---|---|
1 | 122.06 | 2422 | 1803 (74.4%) | 68.44 | 215 | 1.8 |
2 | 119.96 | 3533 | 1535 (43.4%) | 65.56 | 194 | 2.0 |
2.2 | 9.69 | 248 | 199 (80.2%) | |||
3 | 103.24 | 2582 | 1959 (75.9%) | 60.06 | 260 | 1.7 |
4 | 121.09 | 2235 | 1203 (53.8%) | 57.25 | 134 | 2.1 |
5 | 33.04 | 1281 | 659 (51.4%) | 51.96 | 84 | 0.8 |
5.2 | 7.83 | 124 | 75 (60.5%) | 18 | ||
6 | 81.23 | 1752 | 1079 (61.6%) | 44.36 | 117 | 1.8 |
7 | 25.67 | 889 | 758 (85.3%) | 43.46 | 120 | 0.6 |
7.2 | 12.63 | 217 | 198 (91.2%) | |||
8 | 89.42 | 2512 | 1312 (52.2%) | 40.20 | 178 | 2.2 |
9 | 61.39 | 1723 | 889 (51.6%) | 38.06 | 120 | 1.6 |
10 | 74.41 | 2912 | 1675 (57.5%) | 31.90 | 310 | 2.3 |
11 | 50.81 | 1012 | 783 (77.4%) | 30.07 | 98 | 1.7 |
12 | 84.92 | 1312 | 754 (57.5%) | 28.80 | 123 | 2.9 |
13 | 27.37 | 620 | 423 (68.2%) | 27.81 | 41 | 1.0 |
14 | 56.76 | 1553 | 1037 (66.8%) | 24.38 | 165 | 2.3 |
15 | 42.48 | 586 | 541 (92.3%) | 24.31 | 88 | 1.7 |
16 | 27.70 | 377 | 328 (87.0%) | 21.37 | 49 | 1.3 |
Total | 1151.70 | 27890 | 17210 (61.7%) | 657.99 | 2314 | |
Mean | 60.62 | 1.8 |
