Table 1 V. parvula genes in key metabolic pathways that were differentially expressed in coaggregates compare with monocultures.
Gene (HSIVP1) | Vpar ID | Gene description | Fold-changea | P adj |
|---|---|---|---|---|
Alanine, aspartate and glutamate metabolism | ||||
RS00110 | Vpar_0075 | aspartate aminotransferase | −23 | 5.5 × 10−3 |
RS01170 | Vpar_0278 | L-asparaginase | −21 | 1.8 × 10−7 |
RS01260 | Vpar_0296 | aspartate racemase | −9.5 | 2.8 × 10−4 |
RS02565 | Vpar_0563 | aspartate carbamoyltransferase (pyrB) | −3.8 | 2.8 × 10−4 |
RS07610 | Vpar_1550 | glutamate dehydrogenase | −53 | 1.0 × 10−5 |
RS07685 | Vpar_1568 | argininosuccinate synthase | −11 | 1.3 × 10−7 |
Arginine and proline metabolism | ||||
RS00110 | Vpar_0075 | aspartate aminotransferase | −23 | 5.5 × 10−3 |
RS01940 | Vpar_0438 | s-adenosylmethionine decarboxylase proenzyme | −18 | 4.9 × 10−8 |
RS06910 | Vpar_1429 | pyrroline-5-carboxylate reductase (proC) | −4.6 | 6.1 × 10−3 |
RS07610 | Vpar_1550 | glutamate dehydrogenase | −53 | 1.0 × 10−5 |
RS07685 | Vpar_1568 | argininosuccinate synthase | −11 | 1.3 × 10−7 |
Mismatch repair | ||||
RS08370 | Vpar_0002 | DNA polymerase III | 5.1 | 0.015 |
RS04315 | Vpar_0919 | exodeoxyribonuclease small subunit (xseA) | −7.8 | 2.5 × 10−2 |
RS04495 | Vpar_0958 | DNA polymerase III subunit alpha (polC) | 3.8 | 4.7 × 10−3 |
RS05520 | Vpar_1000 | DNA helicase | 2.8 | 4.2 × 10−2 |
RS05790 | Vpar_1213 | single-stranded DNA-specific exonuclease | 3.1 | 1.8 × 10−2 |
Taurine and hypotaurine metabolism | ||||
RS05910 | Vpar_1231 | acetate kinase (ackA) | −2.7 | 4.2 × 10−2 |
RS08975 | Vpar_1716 | phosphate acetyltransferase | −5.7 | 2.2 × 10−3 |
