Table 2 List of differentially expressed transcription factors (TFs) in Sw-7 compared to the S-line after TSWV inoculation.
S. lycopersicum accession | Annotationa | 4 dpi | 7 dpi | 14 dpi | 21 dpi | 35 dpi |
|---|---|---|---|---|---|---|
AP2/ERF-AP2 Family | ||||||
Solyc05g051380 | AP2-like ethylene-responsive | — | — | — | −4.644 | — |
Solyc06g075510 | AP2-like ethylene-responsive | — | — | — | −2.252 | — |
Solyc02g077370 | Ethylene responsive TF-2 | — | — | −5.059 | — | — |
Solyc03g093540 | Ethylene responsive TF-1a | — | — | — | −2.396 | — |
Solyc03g093560 | Ethylene responsive TF-2 | — | — | — | −2.556 | — |
Solyc03g093610 | Ethylene responsive TF-1b | — | — | — | — | −2.837 |
Solyc04g071770 | Ethylene responsive TF-2a | — | — | — | −3.184 | — |
Solyc05g052410 | Ethylene responsive TF-1 | — | — | — | −5.059 | — |
Solyc11g012980 | Ethylene responsive TF-9 | — | — | — | −4.322 | — |
BHLH and BZIP Family | ||||||
Solyc02g087860 | Transcription factor style2.1 | — | — | — | 1.840 | — |
Solyc03g121240 | bHLH TF-like | — | — | — | — | 2.384 |
Solyc04g007300 | bHLH TF | — | — | — | 6.759 | — |
Solyc07g005400 | bHLH TF | — | — | — | −2.396 | — |
Solyc12g036470 | bHLH TF | — | — | — | −4.644 | — |
Solyc01g109880 | bZIP TF | — | — | — | −2.837 | — |
Solyc04g082890 | bZIP TF | — | — | — | −1.889 | — |
Solyc07g062710 | bZIP TF-family protein | — | — | — | 1.807 | — |
Solyc10g078290 | bZIP TF-family protein | — | — | — | −2.000 | — |
Zinc Finger Protein Family | ||||||
Solyc05g009310 | ZF-CONSTANS-LIKE 16 | — | — | — | −6.644 | — |
Solyc05g024010 | ZF-CONSTANS-LIKE | — | — | — | −3.184 | — |
Solyc09g074560 | ZF-CONSTANS-LIKE | — | — | — | −2.474 | — |
Solyc01g090840 | Cys2/His2 ZF | — | — | — | −3.837 | — |
Solyc01g107170 | Zinc finger protein | — | — | — | −3.059 | — |
Solyc06g075780 | Cys2/His2 ZF | — | — | — | −4.059 | −3.184 |
Solyc11g073060 | ZF-family protein | — | — | — | −4.644 | −5.059 |
Solyc06g071860 | ZF-CCCH-67 | — | — | — | −2.644 | — |
Solyc01g102980 | Zinc finger-HD | −2.474 | — | — | — | — |
Solyc04g080490 | Zinc finger-HD | — | — | — | 2.395 | — |
Solyc09g005560 | Zinc finger and SCAN | — | — | — | −6.644 | — |
GARP, MYB, GRAS and Scarecrow Family | ||||||
Solyc06g061030 | GARP-ARR-B | — | — | — | −2.059 | — |
Solyc10g076460 | Myb-like DNA-binding domain | — | — | — | −2.223 | — |
Solyc05g053090 | GRAS family | — | — | — | −2.556 | — |
Solyc05g054170 | Scarecrow-like 1 | — | — | — | −2.644 | — |
HB-HD-ZIP Family | ||||||
Solyc02g063520 | Homeobox leucine zipper | — | — | — | — | −2.252 |
Solyc03g082550 | Homeobox leucine zipper | — | — | — | −3.322 | — |
Solyc05g051460 | Homeobox-leucine zipper | — | — | — | −2.474 | — |
Solyc06g053220 | Homeobox leucine zipper | — | — | — | −2.059 | — |
Solyc08g083130 | Homeobox leucine zipper | — | — | — | −3.322 | — |
Solyc03g034150 | Homeobox leucine zipper | — | — | — | — | −4.322 |
HS-TF, LOB and MADS Family | ||||||
Solyc02g090820 | Heat stress TF- | — | — | — | −3.474 | — |
Solyc06g053960 | Heat stress TF-A3 | — | — | — | −2.474 | — |
Solyc03g119530 | LOB domain protein 42 | — | — | — | — | −2.943 |
Solyc04g077990 | LOB domain protein 38 | — | — | −2.396 | — | −5.059 |
Solyc11g072470 | LOB domain protein 1 | — | — | — | −3.644 | — |
Solyc03g114840 | MADS box | — | — | — | 1.915 | — |
MYB Family | ||||||
Solyc03g093890 | Myb-related TF | — | — | — | — | −2.737 |
Solyc05g048830 | MYB TF | — | — | — | −2.737 | - |
Solyc06g053610 | Myb-related TF | — | — | — | −2.644 | - |
Solyc07g008010 | Myb TF | — | — | — | 1.891 | - |
Solyc08g008480 | Myb TF | — | — | — | 2.118 | - |
Solyc06g005310 | Myb TF | — | — | — | −2.737 | - |
NAC Family | ||||||
Solyc02g077610 | NAC domain TF | — | — | — | −3.184 | −3.322 |
Solyc02g093420 | NAC domain TF | — | — | — | −2.837 | −2.737 |
Solyc03g115850 | NAC domain TF | — | — | — | −3.837 | — |
Solyc05g021090 | NAC domain TF | — | — | — | −6.644 | — |
Solyc06g069710 | NAC domain TF | — | — | — | −6.644 | — |
Solyc07g045030 | NAC domain TF | — | — | — | −4.322 | — |
Solyc08g077110 | NAC domain TF | — | — | — | −4.644 | — |
Solyc10g055760 | NAC domain TF | — | — | −2.837 | — | — |
Solyc11g068620 | NAC domain TF | — | — | −4.322 | — | −2.644 |
Solyc12g013620 | NAC domain TF | — | — | — | −4.644 | −2.837 |
WRKY Family | ||||||
Solyc02g080890 | WRKY TF-16 | — | — | — | −3.474 | — |
Solyc04g051690 | WRKY TF-16 | — | — | −2.943 | — | — |
Solyc06g008610 | WRKY TF-25 | — | — | — | −2.120 | — |
Solyc07g051840 | WRKY TF | — | — | — | −2.396 | — |
Solyc07g056280 | WRKY TF-16 | — | — | — | — | −2.737 |
Solyc08g062490 | WRKY TF-16 | — | — | — | −3.837 | — |
Solyc08g067340 | WRKY TF | — | — | — | — | −3.474 |
Solyc08g067360 | WRKY TF-9 | — | — | — | −6.644 | — |
Solyc09g014990 | WRKY-like TF | — | — | −2.252 | — | — |
Solyc09g066010 | WRKY TF-25 | — | — | — | −2.252 | — |
Solyc10g009550 | WRKY TF | — | — | −3.184 | −4.644 | — |
Other Family members | ||||||
Solyc05g056040 | Auxin response factor 14 | — | — | — | −2.184 | - |
Solyc07g007220 | S/T phosphatase | — | — | — | −2.474 | — |
Solyc09g074760 | Nuclear TF- Y subunit B-3 | — | — | — | 1.618 | — |
Solyc10g076180 | Plant-specific domain | — | — | — | −5.059 | — |
Solyc12g014140 | TF CYCLOIDEA | −3.644 | — | 3.474 | — | — |
Solyc09g005560 | Zinc finger and SCAN | — | — | — | −6.644 | — |
