Table 3 Comparison of nucleotide and amino acid sequence identities of Ych with representative members of Orthoreovirus species (%).

From: Phenotypic and genetic characterisation of an emerging reovirus from Pekin ducks in China

Strains

λA

λB

λC

μA

μB

μNS

σC

σA

σB

σNS

ARV-D2533/6/1-10

nt

94.1

91.7

87.7

93.4

89.6

92.1

85.5

89.6

91.8

90.3

aa

98.1

97.4

94.9

93.3

98.5

95.8

91.7

96.4

97.6

97.0

ARV-Ch/Tua

nt

72.0–72.8

66.6–67.3

55.2–56.1

59.4–60.3

64.2–65.7

57.6–58.9

33.6–37.0

63.6–64.7

54.8–58.7

61.2–62.9

aa

84.3–85.0

75.4–76.3

54.2–55.2

60.4–61.7

69.6–72.4

55.8–57.6

21.6–24.4

66.7–67.6

51.9–55.7

62.8–64.9

ARV-Wa Classicalb

nt

71.3–72.3

65.8–66.5

56.0–56.4

57.6–60.6

62.4–62.7

57.7–58.5

36.0–38.0

63.3–64.8

59.1–60.2

61.3–62.7

aa

83.8–84.2

75.5–76.4

55.3–55.6

60.0–61.1

66.5–66.9

55.8–57.4

24.1–25.2

66.2–67.1

55.2–57.6

63.3–64.9

ARV-Wa Novelc

nt

71.4–72.1

65.8–66.3

56.0–56.4

60.3–60.7

65.7–66.0

57.3–57.8

39.6–44.5

63.8–64.9

60.6–61.6

60.7–62.0

aa

83.8–84.6

75.6–75.9

55.8–56.0

60.7–61.3

71.2–72.0

55.5–56.6

26.7–27.3

66.7–67.4

59.2–60.6

63.0–64.1

NBVd

nt

65.3–66.0

36.5–56.1

45.8–46.7

49.5–50.9

62.7–63.1

28.4–48.4

25.8–31.1

56.8–58.1

43.2–44.2

55.2–55.4

aa

72.2–72.6

36.7–40.1

36.4–40.8

45.3–46.2

68.3–69.2

7.6–38.3

6.5–17.7

56.1–56.6

30.0–30.3

51.1–51.6

BRVe

nt

36.7

53.2

39.8

44

47.6

39.8

—

41.6

35.4

41.4

aa

8.4

49.4

27.9

31.9

39

25.8

—

29.9

16.9

25.6

RRVf

nt

54.4

55.3

40.7

46.6

56.5

39.5

34.2

42.9

39.5–39.9

44

aa

49.7

56.3

28

38.7

53

24.8

16.1

33.8

20.4–21.3

31

MRVg

nt

51.0–51.3

53.9–54.6

41.0–41.8

40.9–41.4

50.4–51.0

38.4–40.1

25.3–28.5

41.8–43.5

35.4–36.4

40.4–41.4

aa

42.9–43.5

52.2–52.7

28.2–28.6

26.8–27.4

44.9–45.7

20.9–21.7

11.6–15.4

27.2–28.4

14.7–16.4

23.1–24.0

  1. aChicken (S1133, 138, 176, AVS-B, GX/2010/1, T1781) and turkey (19831M09, 22342/13, D1246) origin ARVs.
  2. b“Classical” waterfowl origin ARVs: Muscovy duck (ZJ2000M, 815-12, D1546, D2044) and goose (D20/99).
  3. c“Novel” waterfowl origin ARVs: Muscovy duck (ZJ00M, NP03, J18), Pekin duck (TH11, HC, 091), wild Mallard duck (SD-12) and goose (03G).
  4. dNBVs (AF059718.1, AF059722.1, AF059726.1, AF218360.1, JF342672.1-JF342677.1, JF342666.1-JF342671.1, AY357730.1-AY357733.3, JF811580.1-JF81153.1).
  5. eBRVs (AF059719.1, AF059723.1, AF059727.1, HQ847903.1-HQ847908.1).
  6. fRRVs (AY238886.1, KT696547.1-KT696556.1).
  7. gMRVs: MRV-1 (B/03), MRV-2 (BYD1), MRV-3 (T3D, ZJ2013), MRV-4 (Ndelle).
  8. “—”: no equivalent sequence.
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