Table 1 SNV thresholds corresponding to given true positive rate (TPR) in ROC curves.

From: A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks

 

TPR

ConsGene

ConsSequence

Intersection

S. aureus

80%

49

22

7

K. pneumoniae

80%

37

11

4

E. faecium

85%

5

4

9

  1. For E. faecium, we choose a slightly higher TPR to obtain a threshold that leaves some room for error.
Back to article page