Table 3 Genotypes of the three NS-SNPs with 22 animals above the median log-PVL and 22 animals below the median log-PVL.

Chromosome

Chr.1

Chr.7

Chr.13

Location

90,806,827

87,945,244

17,064,452

Ref./Var.

C/T

A/G

C/T

Odds Ratio

4.59

1.34

19.52

95% confidence

1.27 to 21.09

0.51 to 3.57

2.70 to 863.87

p

0.016

0.656

3.33 × 10 ⁻⁴

23037 (IR) [0.000]

C/C

A/A

C/C

14468 (IR) [1.732]

C/C

A/A

C/C

9204 (IV) [1.778]

C/C

A/A

C/C

11137 (IV) [1.778]

C/C

A/A

C/C

11245 (IV) [1.778]

C/C

A/A

C/C

11637 (IV) [1.778]

C/T

G/G

C/C

15885 (IR) [1.959]

C/T

A/A

C/C

OBHJ6 (IR) [2.153]

C/C

A/A

C/C

9413 (IV) [2.222]

C/C

G/G

C/T

OBG7 (IR) [2.228]

C/C

A/A

C/C

OBPR6 (IR) [2.283]

C/C

A/A

C/C

Z776 (IV) [2.477]

C/C

G/G

C/C

10515 (IV) [2.526]

C/C

A/G

C/C

10228 (IV) [2.565]

C/C

G/G

C/C

15461 (IR) [2.613]

C/C

A/A

C/C

11296 (IV) [2.771]

C/C

A/G

C/C

OBFE6 (IR) [2.899]

C/C

A/G

C/C

9691 (IV) [2.905]

C/C

A/A

C/C

20595 (IV) [2.964]

C/C

A/A

C/C

8249 (IV) [2.998]

C/C

A/A

C/C

23060 (IR) [3.094]

C/T

A/G

C/C

20351 (IR) [3.094]

C/T

G/G

C/C

20654 (IV) [3.137]

C/C

A/A

C/C

15232 (IR) [3.273]

T/T

A/G

C/T

10116 (IV) [3.398]

C/C

A/A

C/C

15693 (IV) [3.428]

C/C

A/A

C/T

473 (IV) [3.499]

T/T

A/G

C/C

10024 (IV) [3.544]

C/T

A/A

C/C

9345 (IV) [3.614]

C/C

A/A

C/C

20525 (IV) [3.925]

C/C

A/G

C/T

9859 (IV) [4.004]

C/C

A/A

C/T

8141 (IV) [4.053]

C/C

A/G

C/C

15596 (IV) [4.053]

C/T

A/A

C/T

23014 (IR) [4.124]

C/C

A/A

C/T

OBRG6 (IR) [4.262]

C/C

A/G

C/C

4763 (IV) [4.326]

C/C

G/G

C/C

8102 (IV) [4.506]

C/C

G/G

T/T

20483 (IV) [4.586]

C/C

A/G

C/T

11360 (IV) [4.828]

T/T

G/G

C/C

Z860 (IV) [4.968]

C/T

A/A

T/T

Z857 (IV) [5.239]

C/T

G/G

C/T

OBRF6 (IR) [5.265]

T/T

A/A

C/C

10435 (IV) [5.399]

C/T

G/G

C/T

10465 (IV) [5.559]

C/T

A/G

C/T