Table 1 Coverage of the Darmor-bzh genome generated in each sample across all sequencing runs and their associated total percentage of heterozygous genotypes.

From: Assessment of low-coverage nanopore long read sequencing for SNP genotyping in doubled haploid canola (Brassica napus L.)

 

Illumina

Minion

All runs

Run 1

Run 2

Run 3

Run 4

Coverage

% hets

Coverage

% hets

Coverage

% hets

Coverage

% hets

Coverage

% hets

Coverage

% hets

DH-1

7.6

3.7

4.2

4.0

0.9

2.6

0.5

2.0

1.5

2.6

1.4

2.5

DH-2

9.1

4.6

7.4

4.0

0.9

2.8

0.4

2.1

3.0

2.5

3.0

2.5

DH-3

4.9

4.8

2.8

4.4

0.9

2.7

0.6

2.0

0.7

3.1

0.6

3.0

DH-4

8.4

6.1

3.9

4.1

1.0

2.5

0.6

1.8

1.2

2.9

1.1

2.8

DH-5

4.4

5.2

1.7

5.1

1.0

3.0

0.5

2.3

0.1

3.7

0.1

3.6

DH-6

6.3

3.6

2.4

4.0

1.1

2.4

0.5

2.1

0.4

3.2

0.4

3.0

DH-7

12.0

4.8

4.9

4.1

0.9

2.7

0.6

2.1

1.8

2.7

1.7

2.7

DH-8

14.4

4.3

4.9

3.9

1.1

2.5

0.6

1.9

1.6

2.7

1.6

2.6

DH-9

9.5

4.1

1.7

4.2

0.9

2.5

0.5

1.9

0.2

3.5

0.1

2.9

AVERAGE

 

4.6

 

4.2

 

2.6

 

2.0

 

3.0

 

2.8

Correlation with coverage

 

−0.09

 

−0.56

 

−0.15

 

−0.47

 

−0.89***

 

−0.75**

  1. ***Signif at 0.01.
  2. **Signif at 0.02.
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