Table 3 Analysis of genotype calls which are not consistent between the Illumina and minION sequences, based on whether the genotype call is homozygous or heterozygous in Illumina.

From: Assessment of low-coverage nanopore long read sequencing for SNP genotyping in doubled haploid canola (Brassica napus L.)

Illumina Genotype

minION Genotype

Percentage

Homozygous

Same genotype as Illumina

95.0

Discrepant

5.0

    Discrepant and homozygous

    31.8

    Discrepant and heterozygous

    68.2

Heterozygous

Same genotype as Illumina

15.2

Discrepant (i.e. homozygous)

84.7

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