Table 1 Sequence read statistics for all RNA-seq libraries.

From: Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogen

Sample

Replicates

Total reads*

Total mapped readsa

Total uniquely mapped reads

Multiple mapped reads

Total reads mapped (%)

5 DAI - Control

3

27,783,727 (26,881,845)

16,590,034

12,051,719

4,538,315

30.54

5 DAI - Infected

3

28,179,752 (27,266,828)

16,785,042

12,133,033

4,652,009

30.77

200 DAI - Control

3

28,127,128 (26,228,856)

11,459,114

10,187,726

1,271,388

21.84

200 DAI - Infected

3

28,507,485 (26,628,131)

13,302,600

8,138,565

5,164,035

24.97

  1. *Paired-end RNA-seq reads; values in parentheses indicate cleaned, high-quality sequence reads.
  2. aRNA-seq reads mapped to the Sorghum bicolor (v3.1 release) genome.
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