Table 2 Number of reads obtained, retained after quality control, and mapped to the reference genome.
From: Effect of heritable symbionts on maternally-derived embryo transcripts
Treatment | Replicate | Total reads | Reads after quality control | Reads mapped to reference genome | ||
|---|---|---|---|---|---|---|
Number | Number | % | Number | % | ||
Control | 1_gaII | 38,623,190 | 38,595,804 | 99.93 | 36,658,295 | 94.98 |
Control | 2_TruSeq_4 | 32,414,845 | 32,413,140 | 99.99 | 31,382,402 | 96.82 |
Control | 6_TruSeq_6 | 28,893,141 | 28,891,426 | 99.99 | 27,923,563 | 96.65 |
Control | 9_TruSeq_7 | 31,672,204 | 31,672,204 | 100.00 | 30,671,362 | 96.84 |
Hyd1 | 3_gaII | 39,050,068 | 39,031,083 | 99.95 | 36,931,211 | 94.62 |
Hyd1 | 3_TruSeq_2 | 28,074,997 | 28,074,997 | 100.00 | 27,151,330 | 96.71 |
Hyd1 | 10_TruSeq_12 | 31,084,062 | 31,084,062 | 100.00 | 30,070,722 | 96.74 |
MSRO | 2_gaII | 36,838,900 | 36,824,546 | 99.96 | 34,640,850 | 94.07 |
MSRO | 1_TruSeq_2 | 31,841,684 | 31,832,465 | 99.97 | 30,867,941 | 96.97 |
MSRO | 5_TruSeq_5 | 30,537,077 | 30,535,822 | 100.00 | 29,442,640 | 96.42 |
MSRO | 8_TruSeq_6 | 30,124,318 | 30,124,318 | 100.00 | 29,172,390 | 96.84 |
wMel | 4_TruSeq_4 | 32,691,282 | 32,691,282 | 100.00 | 31,449,013 | 96.20 |
wMel | 7_TruSeq_5 | 27,032,887 | 27,032,887 | 100.00 | 26,073,220 | 96.45 |
wMel | 11_TruSeq_7 | 28,550,836 | 28,548,722 | 99.99 | 27,595,195 | 96.66 |
